Mutational analysis of VACM-1/cul5 exons in cancer cell lines
STEVEN P. LEWIS
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Contributed equally to the project.
Search for more papers by this authorANGELICA N. Willis
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Contributed equally to the project.
Search for more papers by this authorALYSSA E. JOHNSON
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Search for more papers by this authorMARIA A. BURNATOWSKA-HLEDIN
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Search for more papers by this authorSTEVEN P. LEWIS
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Contributed equally to the project.
Search for more papers by this authorANGELICA N. Willis
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Contributed equally to the project.
Search for more papers by this authorALYSSA E. JOHNSON
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Search for more papers by this authorMARIA A. BURNATOWSKA-HLEDIN
Department of Biology, Hope College, Holland, MI
Department of Chemistry, Hope College, Holland, MI
Search for more papers by this authorAbstract
Lewis SP, Willis AN, Johnson AE, Resau J, Burnatowska-Hledin MA. Mutational analysis of VACM-1/cul5 exons in cancer cell lines. APMIS 2011; 119: 421–30.
VACM-1, a cul-5 gene product, functions via an E3 ligase complex and when overexpressed, has an antiproliferative effect in many cell types. Overexpression of VACM-/cul5 cDNA mutated at the PKA-specific phosphorylation site at Ser730 reversed this phenotype. These effects are associated with the appearance of larger Mr species subsequently identified as a Nedd8-modified VACM-1/cul5. Although decreased levels of VACM-1 mRNA detected in several cancers and cancer cell lines may explain the progression of cell growth, possible genetic and epigenetic changes in its sequence have not been analyzed. We hypothesized that in rapidly proliferating cells, VACM-1/cul5 may be mutated at either the PKA-specific phosphorylation site or the consensus neddylation site. We used RT-PCR and PCR, to amplify and to sequence mRNA and genomic DNA, respectively. To date we have sequenced all 19 coding exons of the VACM-1/cul5 gene in T47D breast cancer cells, U138MG glioma cells, ACHN renal cancer cells, and OVCAR-3 ovarian cancer cells. Our results indicate that in those cells VACM-1/cul5 is not mutated at the putative phosphorylation or the neddylation site. We have found one silent mutation in the genomic DNA isolated from U138MG, ACHN, and OVCAR-3 cell lines, but not from T47D cells. Our work suggests that in T47D breast cancer cells biologic activity of VACM-1/cul5 may be regulated by posttranslational modifications.
References
- 1 Chen C, Seth AK, Aplin AE. Genetic and expression aberrations of E3 ubiquitin ligases in human breast cancer. Mol Cancer Res 2006; 4: 695–707.
- 2 Soucy TA, Smith PG, Milhollen MA, Berger AJ, Gavin JM, Adhikari S, et al. An inhibitor of NEDD8-activating enzyme as a new approach to treat cancer. Nature 2009; 458: 732–6.
- 3 Petroski MD, Deshaies RJ. Function and regulation of cullin-RING ubiquitin ligases. Nature 2005; 6: 9–22.
- 4 Lee J, Zhou P. Cullins and cancer. Genes Cancer 2010; 1: 690–9.
- 5 Saha A, Deshaies RJ. Multimodal Activation of the Ubiquitin Ligase SCF by Nedd8 Conjugation. Mol Cell 2008; 32: 21–31.
- 6 Mathias N, Johnson SL, Winey M, Adams AEM, Goetsch L, Pringle JR, et al. Cdc53p acts in concert with Cdc4p and Cdc34p to control the G1-to-S-phase transition and identifies a conserved family of proteins. Mol Cell Biol 1996; 16: 6634–43.
- 7 Kipreos ET, Lander LE, Wing JP, He WW, Hedgecock EM. cul1 is required for cell cycle exit in C. elegans and identifies a novel gene family. Cell 1996; 85: 829–39.
- 8 Hori T, Osaka F, Miyamoto C, Okabayashi K, Shimbara N, Kato S, et al. Covalent modification of all members of human cullin family proteins by NEDD8. Oncogene 1999; 18: 6829–34.
- 9 Kamitani TK, Kito HP, Nguyen ETH, Yeh ET. Characterization of NEDD8, a developmentally down-regulated ubiquitin-like protein. J Biol Chem 1997; 272: 28557–62.
- 10 Lin JJ, Milhollen MA, Smith PG, Narayanan U, Dutta A. NEDD8-targeting drug MLN4924 elicits DNA rereplication by stabilizing Cdt1 in S phase, triggering checkpoint activation, apoptosis, and senescence in cancer cells. Cancer Res 2010; 70: 10310–20.
- 11 Pintard L, Kurz T, Glaser S, Willis JH, Peter M, Bowerman B. Neddylation and deneddylation of CUL-3 is required to target MEI-1/Katanin for degradation at the meiosis-to-mitosis transition in C. elegans. Curr Biol 2003; 13: 911–21.
- 12 Huang DT, Ayrault O, Hunt HW, Taherbhoy AM, Duda DM, Scott DC, et al. E2-RING expansion of the NEDD8 cascade confers specificity to Cullin modification. Mol Cell 2009; 33: 483–95.
- 13 Sufan RI, Ohh M. Role of the NEDD8 modification of Cul2 in the sequential activation of ECV complex. Neoplasia 2006; 8: 956–63.
- 14 Swords RT, Kelly KR, Smith PG, Garnsey JJ, Mahalingam D, Medina E, et al. Inhibition of NEDD8-activating enzyme: a novel approach for the treatment of acute myeloid leukemia. Blood 2010; 115: 3796–800.
- 15 Badura-Stronka M, Jamsheer A, Materna-Kiryluk A, Sowinska A, Kiryluk K, Bundy B, et al. A novel nonsense mutation in CUL4B gene in three brothers with X-linked mental retardation syndrome. Clin Genet 2010; 77: 141–4.
- 16 Kim WY, Kaelin WG. Role of VHL gene mutation in human cancer. J Clin Oncol 2004; 22: 4991–5004.
- 17 Zou Y, Liu Q, Chen B, Zhang X, Gou C, Zhou H, et al. Mutation in CUL4B, which encodes a member of Cullin-RING ubiquitin ligase complex, causes X-linked mental retardation. Am J Hum Genet 2007; 80: 561–6.
- 18 Park SW, Chung NG, Hur SY, Kim HS, Yoo NJ, Lee SH. Mutational analysis of hypoxia-related genes HIF1α and CUL2 in common human cancers. APMIS 2009; 117: 880–5.
- 19 Kerzendorfer C, Whibley A, Carpenter G, Outwin E, Chiang S, Turner G, et al. Mutations in Cullin 4B result in a human syndrome associated with increased camptothecin-induced topoisomerase I-dependent DNA breaks. Hum Mol Genet 2010; 19: 1324–34.
- 20 An P, Duggal P, Wang LH, O’Brien SJ, Donfield S, Goedert JJ, et al. Polymorphisms of CUL5 are associated with CD4+ T cell loss in HIV-1 infected individuals. PLoS Genet 2007; 3: 123–32.
- 21 Yu X, Yu Y, Liu B, Luo K, Kong W, Mao P, et al. Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. Science 2003; 302: 1056–60.
- 22 Burnatowska-Hledin M, Spielman WS, Smith WL, Shi P, Meyer JM, Dewitt DL. Expression cloning of an AVP-activated calcium-mobilizing receptor from rabbit kidney medulla. Am J Physiol 1995; 268: F1198–210.
- 23 Byrd PJ, Stankovic T, McConville CM, Smith AD, Cooper PR, Taylor AMR. Identification and analysis of expression of human VACM-1, a Cullin gene family member located on chromosome 11q22-23. Genome Res 1997; 7: 72–5.
- 24 Johnson AE, Le IP, Buchwalter A, Burnatowska-Hledin MA. Estrogen-dependent growth and estrogen receptor (ER)-α concentration in T47D breast cancer cells are inhibited by VACM-1, a cul 5 gene. Mol Cell Biochem 2007; 301: 13–20.
- 25 Van Dort C, Zhao P, Parmelee K, Capps B, Poel A, Listenberger L, et al. VACM-1, a cul-5 gene, inhibits cellular growth by a mechanism that involves MAPK and p53 signaling pathways. Am J Physiol Cell Physiol 2003; 285: C1386–96.
- 26 Lubbers J, Lewis S, Harper E, Hledin MP, Marquez GA, Johnson AE, et al. Resveratrol enhances anti-proliferative effect of VACM-1/cul5 in T47D cancer cells. Cell Biol Toxicol 2010; 27: 95–103.
- 27 Lashlo GS, Cooper JA. Restriction of Src activity by cullin-5. Curr Biol 2009; 19: 157–62.
- 28 Bradley SE, Johnson AE, Le IP, Oosterhouse E, Hledin MP, Marquez GA, et al. Phosphorylation of VACM-1/Cul5 by protein kinase A regulates its neddylation and antiproliferative effect. J Biol Chem 2010; 285: 4883–95.
- 29 Merlet J, Burger J, Gomes J-E, Pintard L. Regulation of cullin-RING E3 ubiquitin-ligases by neddylation and dimerization. Cell Mol Life Sci 2009; 66: 1924–38.
- 30 Fay MJ, Longo KA, Karathanasis GA, Shope DM, Mandernach CJ, Leong JR, et al. Analysis of CUL-5 expression in breast epithelial cells, breast cancer cell lines, normal tissues, and tumor tissues. Mol Cancer 2003; 2: 40.
- 31 Holbeck SL, Collins JM, Doroshow JH. Analysis of Food and Drug Administration-approved anticancer agents in the NCI60 panel of human tumor cell lines. Mol Cancer Ther 2010; 9: 1451–60.
- 32 Huang KT, Dobrovic A, Fox SB. No evidence for DNA methylation of von Hippel-Lindau ubiquitin ligase complex genes in breast cancer. Breast Cancer Res Treat 2010; 124: 853–6.
- 33 Ikediobi ON, Davies H, Bignell G, Edkins S, Stevens C, O’Meara S, et al. Mutation analysis of 24 known cancer genes in the NCI-60 cell line set. Mol Cancer Ther 2006; 5: 2606–12.
- 34 Bauer JA, Morrison BH, Grane RW, Jacobs BS, Borden EC, Lindner DH. IFN-α2b and thalidomide synergistically inhibit tumor-induced angiogenesis. J Interferon Cytokine Res 2003; 23: 3–10.
- 35 Burnatowska-Hledin M, Zeneberg A, Roulo A, Grobe J, Zhao P, Lelkes PL, et al. Expression of VACM-1 protein in cultured rat adrenal endothelial cells is linked to the cell cycle. Endothelium 2001; 8: 49–63.
- 36 Burnatowska-Hledin MA, Kossoris JB, Van Dort CJ, Shearer RL, Zhao P, Murrey DA, et al. T47D breast cancer cell growth is inhibited by expression of VACM-1, a cul-5 gene. BBRC 2004; 319: 817–25.
- 37 Buchwalter A, Van Dort C, Schultz S, Smith R, Le IP, Abbott JL, et al. Expression of VACM-1/cul5 mutant in endothelial cells includes MAPK phosphorylation and maspin degradation and converts cells to the angiogenic phenotype. Microvasc Res 2008; 75: 155–68.
- 38 Wimuttisuk W, Singer JD. The Cullin3 ubiquitin ligase functions as a Nedd8-bound heterodimer. Mol Biol Cell 2007; 18: 899–909.
- 39 Davies H, Bignell GR, Cox C, Stephens P, Edkins S, Clegg S, et al. Mutations of the BRAF gene in human cancer. Nature 2002; 417: 949–54.
- 40 Hainaut P, Soussi T, Shomer B, Hollstein M, Greenblatt M, Hovig E, et al. Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects. Nucleic Acids Res 1997; 25: 151–7.