Isolation and characterization of a thermophilic Bacillus sp. JF8 capable of degrading polychlorinated biphenyls and naphthalene
Corresponding Author
Minoru Shimura
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
*Corresponding author. Tel.: +81 (42) 573-7316; Fax: +81 (42) 573-7349, E-mail address: [email protected]Search for more papers by this authorGouri Mukerjee-Dhar
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
Search for more papers by this authorKazuhide Kimbara
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
Search for more papers by this authorHiroko Nagato
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorHohzoh Kiyohara
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorTakashi Hatta
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorCorresponding Author
Minoru Shimura
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
*Corresponding author. Tel.: +81 (42) 573-7316; Fax: +81 (42) 573-7349, E-mail address: [email protected]Search for more papers by this authorGouri Mukerjee-Dhar
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
Search for more papers by this authorKazuhide Kimbara
Environmental Biotechnology Laboratory, Railway Technical Research Institute, 2-8-38 Hikari-cho, Kokubunji-shi, Tokyo 185-8540, Japan
Search for more papers by this authorHiroko Nagato
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorHohzoh Kiyohara
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorTakashi Hatta
Research Institute of Technology, Okayama Univ. of Science, 401-1 Seki, Okayama-shi, Okayama 703-8232, Japan
Search for more papers by this authorAbstract
Bacillus sp. strain JF8, which was isolated from compost, utilizes naphthalene and biphenyl as carbon sources at 60°C. Biphenyl grown cells of strain JF8 barely degraded naphthalene while naphthalene grown cells did not degrade p-chlorobiphenyl, suggesting the existence of two independent degradation pathways. Isolation of JF8N, a mutant strain which can not utilize biphenyl as a carbon source while retaining the ability to utilize naphthalene, supports this hypothesis. Biphenyl grown cells of strain JF8 can degrade several polychlorinated biphenyl congeners including tetra- and pentachlorobiphenyl. bph and nah probes from mesophilic organisms failed to hybridize to strain JF8 DNA.
References
- [1] Ahmed, M., Focht, D.D. (1973) Degradation of polychlorinated biphenyls by two species of Achromobacter. Can. J. Microbiol. 19, 47–52.
- [2] Bedard, D.L., Unterman, R., Bopp, L.H., Brennan, M.J., Haberl, M.L., Johnson, C. (1986) Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls. Appl. Environ. Microbiol. 51, 761–768.
- [3] Taira, K., Hirose, J., Hayashida, J., Furukawa, K. (1992) Analysis of the bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267, 4844–4853.
- [4] Kimbara, K., Hashimoto, T., Fukuda, M., Koana, T., Takagi, M., Oishi, M., Yano, K. (1989) Cloning and sequencing of two tandem genes involved in the degradation of 2, 3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171, 2740–2747.
- [5] Seto, M., Kimbara, K., Shimura, M., Hatta, T., Fukuda, M., Yano, K. (1995) A novel transformation of polychlorinated biphenyls by Rhodococcus sp. RHA1. Appl. Environ. Microbiol. 61, 3353–3358.
- [6] Mukerjee-Dhar, G., Hatta, T., Shimura, M., Kimbara, K. (1998) Analysis of changes in congener selectivity during PCB degradation by Burkholderia sp. strain TSN101 with increasing concentrations of PCB and characterization of the bphBCD genes and gene products. Arch. Microbiol. 169, 61–70.
- [7] Mohn, W.M., Westerberg, K., Cullen, W.R., Reimer, K.J. Aerobic biodegradation of biphenyl and polychlorinated biphenyls by arctic soil microorganisms Appl. Environ. Microbiol. 63 1997 3378
- [8] Maeda, M., Roberts, M.S., Ohta, Y., Fuji, F., Travisano, M., Kudo, T. (1998) Isolation and characterization of a new aromatic compound-degradation alkalitrophic bacteria. J. Gen. Appl. Microbiol. 44, 101–106.
- [9] Chen, C., Taylor, R. (1995) Thermophilic biodegradation of BTEX by two Thermus species. Biotechnol. Bioeng. 48, 614–624.
- [10] Gurugeyalakshmi, G., Oriel, P. (1989) Isolation of phenol-degrading Bacillus stearothermophilus and partial characterization of the phenol hydroxylase. Appl. Environ. Microbiol. 55, 500–502.
- [11] Mutzel, A., Reinscheid, U.M., Antranikian, G., Müller, R. (1996) Isolation and characterization of a thermophilic Bacillus strain, that degrades phenol and cresols as sole carbon source at 70°C. Appl. Microbiol. Biotechnol. 46, 593–596.
- [12] Dong, F.-M., Wang, L.-L., Wang, C.-M., Cheng, J.-P., He, Z.-Q., Sheng, Z.-J., Shen, R.-Q. (1992) Molecular cloning and mapping of phenol degradation genes from Bacillus stearothermophilus FDTP-3 and their expression in Escherichia coli. Appl. Environ. Microbiol. 58, 2531–2535.
- [13] Natarajan, M.R., Lu, Z., Oriel, P. (1994) Cloning and expression of a pathway for benzene and toluene from Bacillus stearothermophilus. Biodegradation 5, 77–82.
- [14] Johnson, J.L. (1994) Similarity analysis of DNAs. In: Methods for General and Molecular Bacteriology (Gerhardt, P., Murray, R.G.E., Wood, W.A. and Kreig N.R., Eds), pp. 655–682. American Society for Microbiology, Washington, DC.
- [15] Masai, E., Yamada, A., Healy, J.M., Hatta, T., Kimbara, K., Fukuda, M., Yako, K. (1995) Characterization of biphenyl catabolic genes of Gram-positive polychlorinated biphenyl degrader Rhodococcus sp. RHA1. Appl. Environ. Microbiol. 61, 2079–2085.
- [16] Takizawa, N., IIda, T., Sawada, T., Yamauchi, K., Wang, Y.-W., Fukuda, M., Kiyohara, H. (1999) Nucleotide sequence and characterization of genes encoding naphthalene upper-pathway of Pseudomonas aeruginosa PaK1 and P. putida OUS82. J. Biosci. Bioeng. 87, 721–731.
- [17] Simon, M.J., Osslund, T.D., Saunders, R., Ensley, B.D., Suggs, S., Harcourt, A., Suen, W.-C., Cruden, D.L., Gibson, D.T., Zylstra, G.J. (1993) Sequence of genes encoding naphthalene dioxygenase in Pseudomonas putida strain G7 and NCIB 9816-4. Gene 127, 31–37.
- [18] Maniatis, T., Fritsh, E.F. and Sambrook, J. (1982) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
- [19] Ash, C., Farrow, J.A.E., Wallbanks, S., Collin, S.M.D. (1991) Phylogenetic heterogeneity of the genus Bacillus revealed by co, parative analysis of small-subunit-rebosomal RNA suquences. Lett. Appl. Microbiol. 13, 202–206.
- [20] Sneath, P.H.A. (1986) Endospore-forming Gram-positive rods and cocci. In: Bergey's Manual of Systematic Bacteriology (Sneath, P.H.A., Main, N.S., Sharpe, M.E. and Holt J.G., Eds.), pp. 1104–1207. The Williams and Wilkins, Baltimore, MD.
- [21] Pellizari, V.H., Bezborodnikov, S. J.F. Quensen III Tiedje, J.M. (1996) Evaluation of strains isolated by growth on naphthalene and biphenyl for hybridization of genes to dioxygenase probes and polychlorinated biphenyl-degrading ability. Appl. Environ. Microbiol. 62, 2053–2058.
- [22] Kuhm, A.E., Stolz, A., Knackmuss, H.J. (1991) Metabolism of naphthalene by the biphenyl-degrading bacterium Pseudomonas paucimobilis Q1. Biodegradation 2, 115–120.
- [23] Furukawa, K. (1994) Molecular genetics and evolutionary relationship of PCB degrading bacteria. Biodegradation 5, 289–300.
- [24] Takizawa, N., Kaida, N., Torigoe, S., Moritani, T., Sawada, T., Satoh, S., Kiyohara, H. (1994) Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Psedomonas putida OUS82. J. Bacteriol. 176, 2444–2449.