COMPARATIVE PEPTIDE MAPPING AND ISOELECTRIC FOCUSING OF ISOLATED SUBUNITS FROM CHICK EMBRYO BRAIN TUBULIN
Lynn P. Nelles
Department of Biochemistry, Colorado State University, Fort Collins, CO 80523, U.S.A.
The material presented in this paper is included in a dissertation for the Ph.D. degree from Colorado Stale University.
Marshfield Medical Foundation, Inc., 510 North St. Joseph Avenue, Marshfield, WI 54449. U.S.A.
Search for more papers by this authorCorresponding Author
James R. Bamburg
Department of Biochemistry, Colorado State University, Fort Collins, CO 80523, U.S.A.
Author to whom correspondence should be addressed. Address for 1 July 1978–30 June 1979: MRC Laboratory of Molecular Biology, University Postgraduate Medical School, Hills Road, Cambridge CB2 2QH, England.Search for more papers by this authorLynn P. Nelles
Department of Biochemistry, Colorado State University, Fort Collins, CO 80523, U.S.A.
The material presented in this paper is included in a dissertation for the Ph.D. degree from Colorado Stale University.
Marshfield Medical Foundation, Inc., 510 North St. Joseph Avenue, Marshfield, WI 54449. U.S.A.
Search for more papers by this authorCorresponding Author
James R. Bamburg
Department of Biochemistry, Colorado State University, Fort Collins, CO 80523, U.S.A.
Author to whom correspondence should be addressed. Address for 1 July 1978–30 June 1979: MRC Laboratory of Molecular Biology, University Postgraduate Medical School, Hills Road, Cambridge CB2 2QH, England.Search for more papers by this authorThe material presented in this paper is included in a dissertation for the Ph.D. degree from Colorado Stale University.
Marshfield Medical Foundation, Inc., 510 North St. Joseph Avenue, Marshfield, WI 54449. U.S.A.
Abstract—
The α- and β-subunits of chick embryo brain tubulin have been isolated under denaturing conditions and compared with respect to their molecular weight, amino acid composition, tryptic peptide maps, amide content and isoelectric focusing properties. An 8 M-Urea-containing polyacrylamide gel system with varying acrylamide concentrations was used for calculation of the retardation coefficients (KR) of the tubulin subunits. A molecular weight of 53,000 was estimated for each subunit by comparison to KR values for standard proteins. Amide contents of approx 41% of the carboxyl groups of α-tubulin and 48% of the carboxyl groups of β-tubulin were calculated using the average PI value, the pKintrinsic for the ionizable side chains of the amino acids and the amino acid composition of each subunit. Comparative peptide maps of trypsin digested α- and β-tubulin demonstrated 16 peptides unique to each subunit and 23 peptides which comigrate. Both subunits give rise to multiple species on electrofocusing gels. The average isoelectric points for the α- and β-subunits are 5.4 and 5.2, respectively.
REFERENCES
- Ames, G. & Nikaido, K. (1976) Two-dimensional gel electrophoresis of membrane proteins. Biochemistry 15, 616–623.
- Bamburg, J. R., Shooter, E. M. & Wilson, L. (1973a) Assay of microtubule protein in developing embryonic chick dorsal root ganglia. Neurobiology 3, 162–175.
- Bamburg, J. R., Shooter, E. M. & Wilson, L. (1973b) Developmental changes in microtubule protein of chick brain. Biochemistry 12, 1476–1482.
- Bray, D. & Brownlee, S. M. (1973) Peptide mapping of proteins from acrylamide gels. Analyt. Biochem. 55, 213–221.
- Bryan, J. (1974) Biochemical properties of microtubules. Fedn Proc. Fedn Am. Socs. exp. Biol. 33, 152–157.
- Bryan, J. & Wilson, L. (1971) Are cytoplasmic microtubules heteropolymers Proc. natn. Acad. Sci. U.S.A. 68, 1762–1766.
- Cleveland, D. W., Fischer, S. G., Kirschner, M. W. & Laemmli, U. K. (1977) Peptide mapping by limited proteolysis in sodium dodecyl sulfate and analysis by gel electrophoresis. J. bid. Chem. 252, 1102–1106.
- Dutton, G. R. & Barondes, S. (1969) Microtubular protein: synthesis and metabolism in developing brain. Science 166, 1637–1638.
- Easely, C. W. (1965) Combination of specific color reactions useful in the peptide mapping technique. Biochem. biophys. Acta 107, 386–388.
- Easely, C. W., Zegers, B. J. M. & DeVijlder, M. (1969) Application of specialized techniques for specific staining of peptide maps on various media. Biochim. biophys. Acta 175, 211–213.
- Eipper, B. A. (1972) Rat brain microtubule protein: purification and determination of covalently bound phosphate and carbohydrate. Proc. natn. Acad. Sci. U.S.A. 69, 2283–2287.
- Eipper, B. A. (1974) Properties of rat brain tubulin. J. biol. Chem. 249, 1407–1416.
- Feit, H., Slusarek, L. & Shelanski, M. (1971a) Hetergeneity of tubulin subunits. Proc. natn. Acad. Sci. U.S.A., 68, 2028–2031.
- Feit, H., Dutton, G. R., Barondes, S. & Shelanski, M. (1971b) Microtubule protein. Identification in and transport to nerve endings. J. Cell Biol. 51, 138–147.
- Feit, H., Neudeck, U. & Baskin, F. (1977) Comparison of the isoelectric and molecular weight properties of tubulin subunits. J. Neurochem. 28, 697–706.
- Ferguson, K. A. (1964) Starch gel electrophoresis—application to the classification of pituitary proteins and polypeptides. Metabolism 13, 985–1002.
- Fine, R. E. (1971) Heterogeneity of tubulin. Nature New Biol. 233, 283–284.
- Gerday, C. H., Robyns, E., & Gosselin-Rey, C. (1968) High resolution techniques or peptide mapping. Separation of bovine carotid actin peptides on cellulose thin layers and of the corresponding dansyl-peptides on polyamide thin layers. J. Chromatog. 38, 408–411.
- Gruensthn, E. & Rich, A. (1975) Non-identity of muscle and non-muscle actins. Biochem. biophys. Res. Commun. 64, 472–477.
- Hedrick, J. L. & Smith, A. J. (1968) Size and charge isomer separation and estimation of molecular weight of proteins by disc gel electrophoresis. Archs Biochem. Biophys. 126, 155–164.
- Lee, J. C., Frigon, R. P. & Timasheff, S. N. (1973) The chemical characterization of calf brain microtubule protein subunits. J. biol. Chem. 248, 7253–7263.
- Louis, C. & Shooter, E. M. (1972) The proteins of rabbit skeletal muscle sarcoplasmic reticulum. Arch. Biochem. Biophys. 153, 641–655.
- Lowry, O. H., Rosebrough, N. J., Farr, A. L. & Randall, R. J. (1951) Protein measurement with the Folin phenol reagent. J. biol. Chem. 193, 265–275.
- Ludueña, R. F. & Woodward, D. O. (1973) Isolation and partial characterization of α- and β-tubulin from outer doublets of sea-urchin sperm and microtubules of chickembryo brain. Proc. natn. Acad. Sci. U.S.A. 70, 3594–3598.
- Meeker, G. L. & Iverson, R. M. (1971) Tubulin synthesis in fertilized sea urchin eggs. Exp. Cell Res. 64, 129–134.
- Nelles, L. P. (1978) Comparative studies of chick brain tubulin. Application of new analytical techniques. Ph.D. Thesis, Colorado State University, Fort Collins, C0.
- Nelles, L. P. & Bamburg, J. R. (1976) Rapid visualization of protein-dodecyl sulfate complexes in polyacrylamide gels. Analyt. Biochem. 73, 522–531.
- O'Farrell, P. H. (1975) High resolution two-dimensional electrophoresis of proteins. J. biol. Chem. 250, 4007–4021.
- Pardee, J. D. & Bamburg, J. R. (1976) Quantitation of actin in developing brain. J. Neurochem. 26, 1093–1098.
- Raybin, D. & Flavin, M. (1975) An enzyme tryrosylating α-tubulin and its role in microtubule assembly. Biochem. biophys. Res. Commun. 65, 1088–1099.
- Robinson, A. R. (1974) Evolution and the distribution of glutaminyl and asparaginyl residues in proteins. Proc. natn. Acad. Sci. U.S.A. 71, 885–888.
- Robinson, A. R. & Rudd, C. (1974) Deamidation of glutaminyl and asparaginyl residues in peptides and proteins. Curr. Top. Cell. Regul. 8, 247–295.
- Shelakski, M. L., Yen, S.-H. & Lee, V. M. (1976) Neurofilaments and glial filaments, in Cold Spring Harbor Conferences on Cell Proliferation Vol. 3., Cell Motility C ( R. Goldman, T. Pollard & J. Rosenbaum, eds.) pp. 1007–1020. Cold Spring Harbor Laboratory, New york .
- Snyder, J. A. & Mc Intosh, J. R. (1976) Biochemistry and physiology of microtubules. A. Rev. Biochem. 45, 699–720.
- Stephens, R. E. (1975) High-resolution preparative SDS-polyacrylamide gel electrophoresis: fluorescent visualization and electrophoretic elution-concentration of protein bands. Analyt. Biochem. 65, 369–379.
- Stephens, R. E. & Edds, K. T. (1976) Microtubules: structure, chemistry, and function. Physiol. Revs. 56, 709–777.
- Stephens, R. E. (1977) Major membrane protein differences in cilia and flagella: evidence for a membrane-associated tubulin. Biochemistry, 16, 2047–2058.
- Tanford, C. (1962) The interpretation of hydrogen ion titration curves of proteins. Adv. Protein Chem. 17, 69–165.
- Weber, K. & Osborn, M. (1969) The reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis. J. biol. Chem. 244, 4406–4412.
- Weisenberg, R. C., Borisy, G. B. & Taylor, E. W. (1968) The colchicine-binding protein of mammalian brain and its relation to microtubules. Biochemistry 7, 4466–4479.
- Witman, G. B., Carlson, K. & Rosenbaum, J. L. (1972) Chlamydomonas flagella II. The distribution of tubulins 1 and 2 in the outer doublet microtubules. J. Cell Biol. 54, 540–555.