Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors
Ramadoss Dineshram
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Search for more papers by this authorKondethimmanahalli Chandramouli
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorGinger Wai Kuen Ko
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Search for more papers by this authorHuoming Zhang
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorPei-Yuan Qian
Division of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR, China
Search for more papers by this authorTimothy Ravasi
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorCorresponding Author
Vengatesen Thiyagarajan
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Correspondence: Vengatesen Thiyagarajan, tel. +852 2809 2179, fax +852 2809 2197, e-mail: [email protected]Search for more papers by this authorRamadoss Dineshram
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Search for more papers by this authorKondethimmanahalli Chandramouli
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorGinger Wai Kuen Ko
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Search for more papers by this authorHuoming Zhang
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorPei-Yuan Qian
Division of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR, China
Search for more papers by this authorTimothy Ravasi
Division of Biological, Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences and KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900 Kingdom of Saudi Arabia
Search for more papers by this authorCorresponding Author
Vengatesen Thiyagarajan
The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China
Correspondence: Vengatesen Thiyagarajan, tel. +852 2809 2179, fax +852 2809 2197, e-mail: [email protected]Search for more papers by this authorAbstract
The metamorphosis of planktonic larvae of the Pacific oyster (Crassostrea gigas) underpins their complex life-history strategy by switching on the molecular machinery required for sessile life and building calcite shells. Metamorphosis becomes a survival bottleneck, which will be pressured by different anthropogenically induced climate change-related variables. Therefore, it is important to understand how metamorphosing larvae interact with emerging climate change stressors. To predict how larvae might be affected in a future ocean, we examined changes in the proteome of metamorphosing larvae under multiple stressors: decreased pH (pH 7.4), increased temperature (30 °C), and reduced salinity (15 psu). Quantitative protein expression profiling using iTRAQ-LC-MS/MS identified more than 1300 proteins. Decreased pH had a negative effect on metamorphosis by down-regulating several proteins involved in energy production, metabolism, and protein synthesis. However, warming switched on these down-regulated pathways at pH 7.4. Under multiple stressors, cell signaling, energy production, growth, and developmental pathways were up-regulated, although metamorphosis was still reduced. Despite the lack of lethal effects, significant physiological responses to both individual and interacting climate change related stressors were observed at proteome level. The metamorphosing larvae of the C. gigas population in the Yellow Sea appear to have adequate phenotypic plasticity at the proteome level to survive in future coastal oceans, but with developmental and physiological costs.
Supporting Information
Filename | Description |
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gcb13249-sup-0001-FigS1-S7.pptxapplication/mspowerpoint, 4.9 MB | Figure S1. Monthly mean sea surface pH, salinity, and temperature at Jiaozhou Bay in the Yellow Sea, from where adult oysters were collected for this study. Figure S2. Effects of decreased pH, reduced salinity, elevated temperature and their combinations on the percentage of survival of the Crassostrea gigas larvae on day 15 postfertilization. Figure S3. Functional classification of Crassostrea gigas larval proteins (total of 1368 proteins) based on their biological process (A), cellular component (B), and molecular function (C) with the percentage of proteins per category in the enriched dataset. Figure S4. The bar diagram indicating the number of differentially expressed proteins that were up- and down-regulated for each treatment. Figure S5. The four-way Venn diagram showing the number of differentially expressed proteins for individual climate change stressors and combinations of multiple stressors. Figure S6 (A–G) The ClueGO KEGG analysis of proteins showing abundance of alterations of metabolic pathways under decreased pH (P) (A), reduced salinity (S) (B), warming (T) (C), SP (D), TP (E), TS (F), and TSP (G). Figure S7. Comparative relative expression levels of proteins validated at the gene level using RT-PCR. |
gcb13249-sup-0002-TableS1-S3.pptxapplication/mspowerpoint, 73.5 KB | Table S1. Seawater carbonate chemistry under multiple climate change conditions. Table S2. Developmental and physiological responses of the pediveliger larvae to different treatments. Table S3. List of primer sequences for the genes used in the RT-PCR validation. |
gcb13249-sup-0003-TableS4.xlsxMS Excel, 636.8 KB | Table S4. Complete list of total proteins identified and quantified using 8-plex itraq approach by LC MS/MS analyses using LTQ- Orbitrap. A protein for quantitation considered only when it is identified in 2 of the 3 experiments. Abbreviations used to represent different treatments are described in Fig. 1. |
gcb13249-sup-0004-TableS5.xlsxMS Excel, 74.8 KB | Table S5. List of differentially expressed proteins identified and quantified using 8-plex itraq approach by LC MS/MS analyses using LTQ- Orbitrap. |
gcb13249-sup-0005-TableS6.xlsxMS Excel, 14.8 KB | Table S6. List of proteins marked as metamorphosis-responsive in C. gigas larvae. |
gcb13249-sup-0006-TableS7.xlsMS Excel, 41.5 KB | Table S7. List of enriched KEGG pathways for individual stress treatments extracted from the ClueGO cytoscape analysis. |
gcb13249-sup-0007-DataS1.docxWord document, 26.3 KB | Data S1. Materials and Methods. |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
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