The impacts of Cape porcupines on woody plant mortality
Abstract
In terrestrial ecosystems, the activities of semi-fossorial animals such as Cape porcupines have important landscape effects that may manifest in the dry season when the availability of above-ground forage becomes limiting. We investigated the effects of foraging activities of Cape porcupines on savanna landscapes. We measured the size (surface area and depth) of foraging holes of porcupines located at the base of trees in the dry season in two mesic savanna sites at Roodeplaat Farm and Bisley Valley Nature Reserve in South Africa. We also recorded plant and animal activities inside the foraging holes for 3 months. The depth of foraging holes beneath small trees (Vachellia nilotica) was greater than depths beneath old trees (V. robusta and D. rotundifolia). This resulted in the subsequent death of most (>50%) small impacted trees in the dry season at Bisley. The surface area of foraging holes for older trees was greater than that for small trees and even greater for old holes. This study showed that porcupines kill trees or expose them to secondary attacks. The physical impacts of semi-fossorial herbivores in savannas can be significant, with contributions to direct and indirect landscape transformation and restoration.
INTRODUCTION
Fossorial and semi-fossorial mammals such as Cape porcupines (Hystrix africaeaustralis) and aardvarks (Oryceteropus afer) are ecosystem engineers and fulfil an important role in making resources such as shelter and food available to other animals through burrowing (Haussman et al., 2018; Jones et al., 1994; Skinner & Taylor, 2010). The burrows are created when the animal digs for shelter (den) and food (foraging holes) (Whittington-Jones et al., 2011). Digging enables porcupines to access foods such as bulbs and roots that may be unavailable to non-fossorial species (Fattorini & Pokheral, 2012). The foraging holes may vary in size (area and depth) and age (new and old) (Khan et al., 2016; Whittington-Jones et al., 2011). The size of the foraging hole may indicate how deep the animal dug for food (such as tree roots or bulbs) or it may also be influenced by the type of food the animal sought (Alkon, 1999; Khan et al., 2016). The roots of trees that porcupines feed on may also vary with the age of the tree. For example, younger trees may likely have shallow roots while old trees may have deep roots (Kadir et al., 1998). This, too, may likely influence the depth of their digs.
Little has been documented about the foraging behaviour of porcupines and the resultant foraging holes in African savannas. This is likely because porcupines are nocturnal, which limits the ability to study and understand their foraging ecology in the wild. However, they leave a mark on the landscape through disturbance of vegetation and the soil, which in turn bears evidence of their foraging activities despite the nocturnal lifestyle (Andersen, 1987; Haussman et al., 2018). Similar to other herbivores, the feeding behaviour and diet of porcupines as generalist feeders may be impacted by and vary with seasons. Herbivores in southern Africa tend to increase their foraging efforts and intake of previously avoided foods in the dry season (Abraham et al., 2019; Owen-Smith, 1994; Owen-Smith & Chafota, 2012). Bark and roots of trees are reported to be important dietary components of the Cape porcupine's diet (de Villiers & van Aarde, 1994; Sweitzer, 1996). A diet of roots may lead to the health of the tree compromised or its death. Uprooting of trees leading to their death by elephants has been reported in African savannas (Guy, 1976; MacGregor & O'Connor, 2004; O'Connor, 2017). Thus, tampering with the roots of a plant may comprise its health and survival. The extent of feeding on roots of trees has rarely been studied for the smaller herbivores such as porcupines in savannas.
Porcupines excavate soils to create holes in order to access perennial plants such as bulbs and roots (Khan et al., 2000; Wilby et al., 2001), which may be staple food for porcupines. In Italy, crested porcupines were recorded to eat bulbs in both warm and cold months (Mori et al., 2017). The diet of Cape porcupines may vary with season and habitat. The digging effects of porcupines have been reported to vary in severity between agricultural and natural systems (Laurenzi et al., 2016). The foraging activities of porcupines may result in tree damage through girdling, uprooting and debarking (Khan et al., 2000; Kraai et al., 2022). The damage exerted on trees may be influenced by age. For example, old trees were reported to be avoided and trees younger than 20 years were debarked but no deaths of trees were recorded despite utilization by porcupines (Laurenzi et al., 2016).
There is little information on the characteristics, abundance and age of foraging holes of porcupines between seasons. Additionally, no information exists on the size of foraging holes associated with digging for roots of trees. We determined the foraging behaviour of Cape porcupines in two savanna ecosystems and between seasons. In this study, the temporal variation in foraging holes was investigated to determine their extent and persistence on the landscape. A better understanding of these aspects of foraging holes of porcupines is important to determine the potential environmental impact of these animals, and the role of Cape porcupines in savanna ecosystems. The study was aimed at evaluating the seasonal digging effects of Cape porcupines on trees. We predicted that there would be an increase in the number of new foraging holes and the utilization of trees as food during the dry season compared to the wet season.
METHODS AND MATERIALS
Study sites
The study was conducted at Roodeplaat Farm (25°60′ S, 28°33′ E; altitude 1050–1450 m asl) in Gauteng Province and Bisley Valley Nature Reserve (Bisley) (29°65′ S, 30°38′ E; altitude 720–840 m asl), located south of Pietermaritzburg in KwaZulu-Natal Province, both in South Africa.
Roodeplaat occurs in a savanna habitat whose vegetation is described as Marikana Thornveld of the central bushveld bioregion (Mucina & Rutherford, 2006). Trees occurring in Roodeplaat include Dombeya rotundifolia, Vachellia spp. and Ziziphus mucronata while grasses include Heteropogon contortus, Elionurus muticus, Melinis nerviglumis and Fingerhutia africana. Ledebouria revoluta and Ornithogalum tenuifolium are among the common geophytic herbs (Mucina & Rutherford, 2006). The mean maximum temperature in summer (November–April) can reach 29°C and mean minimum temperatures in winter (May–August) can decrease to 2°C with frequent frost. The mean annual rainfall is 646 mm. Soils at Roodeplaat are basaltic-derived melanic clays that have a loam sandy texture that is brought about by shales and quartzites of the Transvaal Supergroup (Mucina & Rutherford, 2006).
Bisley occurs in a woody plant-encroached grassland with valley thicket trees. The reserve straddles the KwaZulu-Natal Hinterland Thornveld and Ngongoni Veld of the sub-escarpment savanna bioregion (Mucina & Rutherford, 2006). The most common trees occurring in this area include Vachellia nilotica and V. sieberiana, while the common grasses include Aristida junciformis, Eragrostis curvula and Panicum maximum (Ward et al., 2017). Forbs consist of geophytic herbs such as Hypoxis argentea and Watsonia densiflora (Mucina & Rutherford, 2006). The mean maximum temperature of Bisley can reach 26°C in February and a mean minimum of 9°C in July. The mean annual rainfall is 694 mm. Soils are shallow sands derived from Glenrosa and Mispah forms of the Natal Group sandstones and include intrusive dolerites of Karoo Supergroup sediments (Mucina & Rutherford, 2006).
Study species
The Cape porcupine is a large (~12.5–17 kg), nocturnal rodent, which occurs in a broad range of natural (e.g. grassland, savanna and forest), urbanized as well as agricultural ecosystems and is a generalist herbivore (Ngcobo et al., 2019; van Aarde, 1987; Viviano et al., 2020). The Cape porcupine has a wide range in southern Africa including parts of central Africa like Uganda and Kenya but avoids arid environments (Smithers, 1983), and is classified by the IUCN as a species of least concern (Cassola, 2016). Porcupines are monogamous and are found living as a family unit of two adults and their offspring. They are hunted for their meat and persecuted by landowners who may view them as pests in agriculture. Porcupines inhabit burrows and caves, and often dig their own burrows but may use burrows dug by aardvarks (Skinner & Taylor, 2010) or inhabit drainage tunnels in urban areas.
Field sampling
Quantifying the disturbance of the soil by porcupines requires frequent follow-up visits to the study sites. The travel restrictions imposed by the Covid-19 pandemic exacerbated the situation and thus confined this aspect of the study to Bisley, which is located closer to the Pietermaritzburg campus of the University of KwaZulu-Natal. Data were collected for both sites but follow-up visits were only done at Bisley. Specifically, sampling took place in July–August at Roodeplaat, and October–November 2019 at Bisley. Data collection at Bisley continued to January, February, May and October 2020, and June, July and August 2021.
Woody plant diet of Cape porcupines
To determine the foraging behaviour of the Cape porcupines, we identified areas with evidence of porcupine diggings and set up plots based on the extent of the diggings and size of trees used by the animals at Roodeplaat and Bisley. As a result, we used larger transects (30 m × 30 m) at Roodeplaat and smaller transects at Bisley (10 m × 10 m). The number of transects we used was also influenced by the area of porcupine activities, which was much larger at Roodeplaat (5–8 ha; 30 transects) and smaller at Bisley (approx. 3 ha; 10 transects).
We collected data on diggings that occurred on trees of varying sizes to access the roots of the tree. Small trees ranged between 0.25 and 25 mm, while large trees had a diameter of up to 42.5 mm. Data collection for root foraging took place between May and August (dry season) at Roodeplaat and Bisley. We identified the tree species eaten by Cape porcupines and recorded their sizes at both sites. We measured diggings (created by porcupines to access roots) that took place at the base of trees in terms of the maximum depth and two perpendicular lengths (used to calculate the surface area) of the foraging holes. We further classified the size of the foraging holes by season, that is, early wet (October and November 2019), wet (January and February 2020) and early dry (May and June 2020) seasons of 2019 to 2020 at Bisley. We also recorded the abundance (%) and age (new or old) of foraging holes for roots of trees from October 2019 to August 2021 at Bisley. Specifically, we measured foraging holes in October and November 2019; February, May, June and October 2020; and June, July and August 2021. We defined foraging holes as new if they were formed in the current season and were less than a month old. New foraging holes were also characterized by a mound made up of loose soil with little to no disturbance and no vegetation on it. Old foraging holes were generally older than a month and showed signs of a disappearing mound and the foraging hole was almost filled with litter/soil (Eldridge & Mensinga, 2007). We also determined tree species and basal diameter of trees whose roots were eaten by Cape porcupines. We then assessed the damage to the tree in terms of survival (alive or dead).
Data analysis
We used descriptive statistics for seasonal (presented in months of the year) digging activities of the Cape porcupines in Bisley. We also used descriptive statistics to present the utilization of the roots of different tree species by Cape porcupines, their sizes (diameter) and survival in Roodeplaat and Bisley. We then used a two-way ANOVA to compare the dependent variables, depth and area of foraging holes, with age (new or old) and tree species as independent variables. Depth and area were log transformed to meet the assumptions of normality. Sample sizes of Ziziphus mucronata and Coddia rudis were too small for analysis in Bisley.
We used another two-way ANOVA to compare depth and area of new and old foraging holes over three seasons (early wet, wet and dry) in Bisley. The depth and area of the foraging holes were transformed for normality. A Tukey post hoc analysis was used to indicate significant differences in means. All data were analysed using IBM SPSS Statistics v. 27 (IBM SPSS Inc., Chicago, IL, USA).
RESULTS
The number and age of foraging holes varied with time of year in Bisley, with foraging activities increasing in the drier months (May–August) of the year (Table 1). Trees used by porcupines for roots were limited to one or two species per site, and specific sizes of trees at either Roodeplaat or Bisley (Table 2). We recorded 105 foraging holes dug on different trees by porcupines, 64 at Roodeplaat and 41 at Bisley in the dry season (May–August), and 320 foraging holes at Bisley between 2019 and 2021.
Time of year | Age | Tree death | ||
---|---|---|---|---|
New | Old | % | N | |
October 2019 | 5.1 | 94.9 | - | |
November 2019 | 50 | 50 | - | |
January 2020 | 53.8 | 46.2 | - | |
February 2020 | 0 | 82.6 | 60.9 | 14 |
May 2020 | 94.3 | 5.6 | 68.2 | 15 |
June 2020 | 100 | 0 | 66.7 | 7 |
October 2020 | 24.4 | 75.6 | 43.9 | 18 |
June 2021 | 84.6 | 13.4 | 58.3 | 7 |
July 2021 | 100 | 0 | 60.0 | 5 |
August 2021 | 100 | 0 | 86.2 | 25 |
Species | Roodeplaat | Bisley | ||||
---|---|---|---|---|---|---|
Use | N | Diameter | Use | N | Diameter | |
Vachellia robusta | 87.1 | 54 | 20.1 (1.2) | — | — | |
Dombeya rotundifolia | 12.9 | 8 | 30.8 (2.6) | — | — | |
Vachellia nilotica | — | — | 95.5 | 83 | 8.9 (0.7) | |
Ziziphus mucronata | — | — | 3.4 | 3 | 11.8 (5.9) | |
Coddia rudis | — | — | 1.1 | 1 | 8.0 - |
The month of October, which is the beginning of the wet season, in both years comprised a greater number of old compared to new foraging holes (Table 1). In contrast, the month of May, June, July and August (dry season) had the greatest number of new foraging holes (Table 1). Thus, the foraging activities of Cape porcupines for tree roots were pronounced in the dry season and decreased in the wet season.
The use of V. nilotica trees by Cape porcupines resulted in the death of most trees (Table 1). The number of trees used and impacted to death increased with the progression of the dry season. Specifically, 15 trees were killed out of 22 used in May and 25 of 29 were killed in August. Overall, 89 trees died out of 144 utilized by porcupines. No death of trees from porcupine foraging activities was recorded for the greater part of the wet season.
Cape porcupines primarily ate the roots of Vachellia robusta and Dombeya rotundifolia to a lesser extent at Roodeplaat, while Vachellia nilotica roots were eaten more than Z. mucronata and C. rudis at Bisley (Table 2). The size of the trees used for roots by Cape porcupines tended to be small in both sites except for larger trees of V. robusta selected in Roodeplaat. The preference for V. nilotica trees made them susceptible to death after use of roots by the Cape porcupines at Bisley (Table 2). No other deaths of trees were recorded.
The surface area of new and old foraging holes of different tree species (tree × age interaction) was significantly different (F2, 97 = 5.31, p = 0.006). The surface area of old foraging holes was larger than that of new foraging holes for V. robusta and D. rotundifolia occurring at Roodeplaat (Figure 1a). In addition, both new and old foraging holes of D. rotundifolia were larger than foraging holes of V. robusta and V. nilotica. Similarly, the depth of new and old foraging holes differed significantly for different tree species (tree × age interaction: F2, 97 = 4.29, p = 0.016). New and old foraging holes on V. nilotica trees were deeper than foraging holes of V. robusta and new holes of D. rotundifolia (Figure 1b).

The surface area of Cape porcupine foraging holes on V. nilotica trees differed significantly with season (F2, 167 = 3.41, p = 0.035). Foraging holes had a larger surface area in the wet season compared to the early wet and early dry seasons (Figure 2a). The depth of the foraging holes differed significantly with interaction of age and season (F2, 167 = 3.65, p = 0.028). The depth of new foraging holes increased in the early dry season, while older holes were shallower in the wet season compared to the early wet and early dry seasons (Figure 2b). Ultimately, the foraging holes were wider and shallower in the wet season.

DISCUSSION
The foraging activities associated with digging by Cape porcupines were greater in the dry than wet season. As predicted, we found more new foraging holes with mounds in the dry season, which likely indicated increased utilization of tree roots by Cape porcupines. In contrast, the landscape was comprised of more old foraging holes in the wet season. As a result, the size of the foraging holes shrunk in the wet season. In addition, shallow foraging holes in Bisley in the early wet and wet seasons indicated a decreased utilization of tree roots compared to the dry season. This may indicate that the roots of the trees were abandoned as a food source in the wet season. Bragg et al. (2005) reported that geophytes were likely a primary food source in the diet of porcupines in the wet season in the Northern Cape of South Africa. Seasonality may thus trigger the switch in diet of Cape porcupines. Switching diet is common behaviour in many herbivorous mammals and driven by food quality and quantity (Abraham et al., 2019; Owen-Smith & Chafota, 2012). In addition, Sweitzer (1996) found that porcupine foraging on tree bark, although not included in the current study, was associated with the food-limiting season. Elephants were also reported to feed on bark and roots of trees in the dry season (Owen-Smith & Chafota, 2012). Generally, it appeared that woody plants in the form of roots thus comprised a greater portion of the dry season diet of Cape porcupines.
The diet of tree roots appeared narrow, as only one major species was utilized in each site, which belongs to the Vachellia genus. Similarly, roots of Burkea africana were preferred out of 11 tree species available to Cape porcupines in a savanna habitat (de Villiers & van Aarde, 1994). Thus, Cape porcupines showed selective utilization of roots of Vachellia species in the dry season. Similar behaviour was reported by Bragg (2003) where porcupines selected 27 of 350 species of geophytes. Vachellia trees are preferred for their nutritional leaves by other herbivores (Aganga et al., 1998; Nzimande et al., 2022; Owen-Smith & Chafota, 2012; van der Merwe & Marshall, 2012). Preferred plants may experience extensive herbivory, which in some cases, may result in the death of the plant (Ihwagi et al., 2009; Shannon et al., 2008) and may be exacerbated by the influence of fire in large trees (Das et al., 2022). In the current study, seedlings of V. nilotica died (63.5%) as a result of Cape porcupine feeding. This may in turn reduce the abundance of V. nilotica, an encroaching plant, in Bisley (Muvengwi et al., 2017). In this light, the effects of Cape porcupine feeding on small trees of V. nilotica may be likened to the African elephant, albeit at a smaller scale in savannas.
Cape porcupines likely made successive visits to roots of larger trees, as the resource is unlikely to be depleted over a once-off feeding event. This may explain the shallow and narrow new holes on V. robusta at Roodeplaat. Yet, foraging holes on seedlings were four times deeper and seven times wider at Bisley compared to Roodeplaat. Similar to Bisley, recently dug foraging holes of geophytes were deep (8 cm) and wide with a surface area of 400 cm2 in the Negev desert highlands in Israel (Alkon, 1999). In addition, porcupines were shown to dig up to a depth of 21 cm for bulbs in Pakistan (Khan et al., 2016). The roots of old trees are likely deeper and may not be easily accessible as younger trees (Dorval et al., 2016; Ennos, 2000). Porcupines are also solitary foragers, which would make their impact on old trees less severe than social foragers. Roots of larger trees are also likely established and stronger than young trees (Perry, 1989), and thus difficult to kill the tree. Larger trees may be less susceptible to the effects of herbivory due to their firm root structure. Thus, the size of foraging holes may vary depending on how deep and wide the animal dug, which may be influenced by the size and location of the resource.
Interestingly, porcupine diggings and subsequent death of trees may contribute to the management of small encroaching trees in Bisley. The biomass, basal cover and abundance of herbaceous vegetation have been shown to improve after the removal of encroaching trees (Mndela et al., 2022). Promoting the growth of herbaceous instead of woody plants is important in savannas, which are prone to woody plant encroachment, which in turn depreciates the state of savanna ecosystems (Luvuno et al., 2022; O'Connor et al., 2014). In essence, Cape porcupines killed V. nilotica trees by detaching the stem from the root and eating the roots, which may enhance the establishment and growth of herbaceous plants where a tree seedling previously occupied. Thus, porcupine foraging activities may play an important role in facilitating landscape changes, and vegetation composition and structure of savannas.
CONCLUSION
Cape porcupines are important in the savanna ecosystem through their foraging activities, which may shape vegetation communities. We have shown that diggings transform the landscape in the dry season and may promote the growth of herbaceous plants in affected areas in the wet season. Increased digging in the dry season coincided with porcupines' increased intake of tree roots during a period of scarcity of herbaceous food resources. As a result, Cape porcupine foraging resulted in the death of small trees, and potentially old trees through persistent use, or through predisposing the plants to attack by other organisms. Porcupines may also, through foraging, result in the recruitment of young plants thereby affecting the demography and structure of plant communities. Foraging activities of porcupines have cascading effects on the landscape, which influence plant and likely animal communities. Cape porcupines are thus capable of modifying savanna habitats and may contribute, even though to a small extent, to eliminating trees in dense areas. A wider sampling regime is likely to strengthen the observed patterns.
AUTHOR CONTRIBUTIONS
Unathi Masiobi Kraai: Data curation (equal); formal analysis (equal); investigation (lead); methodology (lead); writing – original draft (lead). Manqhai Kraai: Conceptualization (equal); formal analysis (equal); investigation (equal); supervision (equal); writing – review and editing (equal). Zivanai Tsvuura: Conceptualization (equal); investigation (equal); supervision (equal); writing – review and editing (equal). Ntuthuko Raphael Mkhize: Conceptualization (equal); funding acquisition (equal); supervision (equal); writing – review and editing (equal). Tlou Julius Tjelele: Funding acquisition (equal); supervision (equal); writing – review and editing (equal).
ACKNOWLEDGEMENTS
We thank Anele Aurelia Khowa, Nandipha Ndamane, Piet Monegi and Thabile Jane Zwane for assistance in the field. This study was made possible through funding from the Agricultural Research Council and the National Research Foundation of South Africa. We thank the School of Life Sciences of the University of KwaZulu-Natal for logistical support. This study is part of research of an MSc by UMK.
CONFLICT OF INTEREST STATEMENT
The authors declare that they have no competing financial or personal interests to influence the work reported in this paper.
Open Research
DATA AVAILABILITY STATEMENT
The datasets generated during and analysed during the current study are available from the corresponding author upon reasonable request.