Genomic Resources Notes accepted 1 April 2015 – 31 May 2015
Abstract
This article documents the public availability of transcriptomic resources for (i) the stellate sturgeon Acipenser stellatus, (ii) the flowering plant Campanula gentilis and (iii) two endemic Iberian fish, Squalius carolitertii and Squalius torgalensis.
Table 1 contains information on the focal species, data type and resource developed, as well as access details for the data. The authors responsible for each genomic resource are listed in the final column. Full descriptions of how each resource was developed and tested are uploaded as (Appendix S1–S3, Supporting Information) with the online version of this manuscript.
| Species (no. of individuals) | Data type | Resources | Authors |
|---|---|---|---|
| Acipenser stellatus (2) | Transcriptome sequencing, assembly, annotation, and SNP and INDEL discovery |
Transcriptome sequence data: NCBI Sequence Read Archive PRJNA278747 Contig assembly: Dryad doi:10.5061/dryad.kj4mh Contigs annotation: Dryad doi:10.5061/dryad.kj4mh KEGG pathways annotation: Dryad doi:10.5061/dryad.kj4mh Putative SNP and INDEL data: Dryad doi:10.5061/dryad.kj4mh Scripts: Dryad doi:10.5061/dryad.kj4mh |
Vidotto M., Grapputo A., Boscari E., Zane L., Congiu L. |
| Campanula gentilis (1) | Transcriptome sequencing, assembly, ORF prediction, annotation and expression levels |
Transcriptome sequence data: European Nucleotide Archive: PRJEB7897 Contig assembly: Dryad DOI doi:10.5061/dryad.1hj3m Putative Open Reading Frames (ORFs): Dryad DOI doi:10.5061/dryad.1hj3m Contig and ORF annotation: Dryad DOI doi:10.5061/dryad.1hj3m Relative expression levels: Dryad DOI doi:10.5061/dryad.1hj3m |
Demet Töre, Federico Luebert, Guilhem Mansion, Ludo A. H. Muller |
| Squalius carolitertii (14) and Squalius torgalensis (14) | Transcriptome sequencing, assembly and annotation |
Transcriptome sequence data: NCBI Sequence Read Archive SRP049801 and SRP049802 Assembled contigs: Dryad doi:10.5061/dryad.fm28d Blast hits: Dryad doi:10.5061/dryad.fm28d Gene ontology annotations Dryad doi:10.5061/dryad.fm28d |
Tiago Filipe Jesus, Ana Rita Grosso, Vera Maria Almeida-Val, Maria Manuela Coelho |
