Volume 27, Issue 2 pp. 405-413
research papers

Seed-skewness algorithm for X-ray diffraction signal detection in time-resolved synchrotron Laue photocrystallography

Dariusz Szarejko

Dariusz Szarejko

Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland

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Radosław Kamiński

Radosław Kamiński

Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland

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Piotr Łaski

Piotr Łaski

Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland

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Katarzyna N. Jarzembska

Corresponding Author

Katarzyna N. Jarzembska

Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland

Katarzyna N. Jarzembska, e-mail: [email protected]Search for more papers by this author
First published: 11 February 2020

Abstract

A one-dimensional seed-skewness algorithm adapted for X-ray diffraction signal detection is presented and discussed. The method, primarily designed for photocrystallographic time-resolved Laue data processing, was shown to work well for the type of data collected at the Advanced Photon Source and European Synchrotron Radiation Facility. Nevertheless, it is also applicable in the case of standard single-crystal X-ray diffraction data. The reported algorithm enables reasonable separation of signal from the background in single one-dimensional data vectors as well as the capability to determine small changes of reflection shapes and intensities resulting from exposure of the sample to laser light. Otherwise, the procedure is objective, and relies only on skewness computation and its subsequent minimization. The new algorithm was proved to yield comparable results to the Kruskal–Wallis test method [Kalinowski, J. A. et al. (2012). J. Synchrotron Rad.19, 637], while the processing takes a similar amount of time. Importantly, in contrast to the Kruskal–Wallis test, the reported seed-skewness approach does not need redundant input data, which allows for faster data collections and wider applications. Furthermore, as far as the structure refinement is concerned, the reported algorithm leads to the excited-state geometry closest to the one modelled using the quantum-mechanics/molecular-mechanics approach reported previously [Jarzembska, K. N. et al. (2014). Inorg. Chem.53, 10594], when the t and s algorithm parameters are set to the recommended values of 0.2 and 3.0, respectively.

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