Volume 100, Issue 4 pp. 405-410
Free Access

Thymus organ cultures and T-cell receptor repertoire development

G. Anderson

G. Anderson

Department of Anatomy, MRC Centre for Immune Regulation, Division of Infection and Immunity, Medical School, University of Birmingham, Birmingham, UK

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E. J. Jenkinson

E. J. Jenkinson

Department of Anatomy, MRC Centre for Immune Regulation, Division of Infection and Immunity, Medical School, University of Birmingham, Birmingham, UK

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First published: 09 October 2008
Citations: 13
Dr Graham Anderson, Department of Anatomy, Medical School, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

Introduction

T cells bearing the αβ form of the T-cell receptor (αβTCR) play a central role in the immune response through the execution of a number of specialized functions, all of which are dependent upon TCR-mediated recognition of antigenic peptide fragments presented by major histocompatibility complex (MHC) molecules.1,2 While CD8+ cells act as direct mediators of cytotoxic killing through recognition of antigen presented by MHC class I molecules, CD4+ cells recognize antigen presented by MHC class II molecules and perform a range of regulatory functions involving contact and/or cytokine-mediated effects. These functions include the regulation of CD8 responses, the regulation of antibody production by B cells and the regulation of cell recruitment in inflammatory responses. Both CD4+ and CD8+ T cells develop most efficiently in the thymus via a complex differentiation programme, and so resistance to viral and other pathogens is compromised in conditions where the thymus fails to develop or function correctly, such as in diGeorge syndrome in humans and in nude rodents. 3 Thus, an analysis of the regulatory processes during intrathymic T-cell development is critical for understanding the complexity of cellular and molecular interactions that constitute the immune response.

Intrathymic maturation is initiated when haemopoietic precursors are recruited to the thymus from sites such as yolk sac, fetal liver or bone marrow via a chemokine-mediated mechanism.4,5 After thymic entry, precursors are triggered by the surrounding thymic microenvironment to undergo a series of differentiation steps, which include rearrangement and expression of genes encoding the β-chain of the TCR complex. Cells bearing productively rearranged TCR-β proteins are able to express a complete pre-TCR complex, signalling through which then triggers further maturational events, including cessation of TCR-β rearrangement, induction of TCR-α rearrangement and expression of CD4 and CD8 co-receptors. 6–8 Such differentiation events are also accompanied by an extensive wave of cellular proliferation, which ultimately gives rise to a large pool of non-dividing CD4+ CD8+ thymocytes bearing low levels of the αβTCR complex (CD4+ CD8+ αβTCRlow cells).

As the random gene rearrangement processes regulating αβTCR expression generate a diverse repertoire of TCR specificities, it is essential that CD4+ CD8+ thymocytes undergo stringent selection events, which eliminate the risk of autoreactivity and at the same time promote the maturation of cells capable of participating in an immune response. Thus, lack of TCR ligation by self-MHC molecules during the 3–4 day lifespan of CD4+ CD8+ thymocytes results in the induction of a death-by-neglect mechanism, 9 while signals through the TCR can result in two distinct developmental fates: induction of apoptosis (negative selection) or induction of differentiation (positive selection). Precisely how both developmental outcomes can be achieved as a result of αβTCR–peptide/MHC interactions at the CD4+ CD8+ stage of thymocyte development is a major paradox in the intrathymic development of T cells. 10–12

A number of experimental systems have been employed to study both the molecular and cellular mechanisms regulating intrathymic positive- and negative-selection events. In recent years, an approach that has been extensively used to study several aspects of thymocyte maturation is fetal thymus organ culture (FTOC). This approach, in which isolated embryonic thymus lobes are explanted in vitro, allows investigators to access and manipulate aspects of development, including thymic selection, which would be difficult to study in vivo. 13 For example, FTOC analyses have been essential in understanding the role of MHC-bound peptides in positive and negative selection. 14 Moreover, study of thymic stromal cell regulation of positive- and negative-selection events has recently been made possible in vitro by the establishment of reaggregation thymus organ culture (RTOC) techniques ( Fig. 1) allowing reassociation of defined thymocyte and stromal cell combinations. 15–18 The primary aim of this review is to summarize current knowledge of the regulatory mechanisms of T-cell selection in the thymus, and to highlight the use of organ culture techniques in these studies.

Stage-specific analysis of T-cell development in reaggregate thymus organ culture (RTOC). In conventional fetal thymus organ culture (FTOC), thymus lobes isolated from embryos of 15 days' gestation are cultured for a number of days. At the outset of culture, all thymocytes are of the CD4 CD8 phenotype, but within a 5-day culture period, as shown, cells progress through to the CD4+ CD8+ stage of development. In contrast, RTOCs can be initiated with the desired thymocyte subset, in this case CD4+ CD8+ thymocytes, and their development analysed in the presence of defined thymic stromal cells. In this manner, thymic selection events can be analysed in RTOC separately from other thymic events, which occur in conventional FTOC, such as maturation from the CD4 CD8 to CD4+ CD8+ stage. FACS, fluorescence-activated cell sorter; 2-Guo, 2-deoxyguanosine.

SPECIALIZATION OF THE THYMIC MICROENVIRONMENT FOR POSITIVE and NEGATIVE SELECTION

The thymic microenvironment is a complexity of stromal cell types including cortical and medullary epithelial cells, macrophages, dendritic cells and mesenchymal fibroblasts. 19 Accumulating evidence suggests that each of these cell types play an important role during thymocyte development by providing signals that lead to differentiation, proliferation, or cell death. 20 With respect to T-cell selection events, pioneering experiments involving bone marrow chimaeras showed that the process of MHC restriction (positive selection) requires MHC presentation by radioresistant thymic stromal cells (reviewed in ref. 21). Since then, many other studies utilizing FTOC methodology have examined the role of thymic stromal cells in the maturation of CD4+ CD8+ thymocytes. These are summarized below.

Stromal cell requirements for positive selection

Unlike most epithelia, the epithelial cells in the cortex of the thymus express both MHC class I and class II antigens, 22 which provides them with the ability to promote positive selection of both CD8+ and CD4+ T cells. Indeed, a number of FTOC-based studies have highlighted the importance of thymic epithelial cells in the positive-selection process. Thus, alymphoid embryonic thymus lobes, consisting mainly of MHC class II+ epithelial cells, support the generation of mature CD4+ and CD8+ T cells when recolonized by lymphoid precursors in vivo23 and in vitro. 24 However, although it is clear that thymic epithelial cells can support positive selection, it is still controversial as to whether this ability is a unique property of thymic epithelium, or one which is shared by other cell types. Indeed, several studies indicate that the requirement for provision of TCR ligands during positive selection, in the shape of peptide/MHC complexes, can be provided by a wide variety of cells including haemopoietic cells and fibroblasts. 25–27 However, FTOC experiments in which CD4+ CD8+ thymocytes are reassociated with defined stromal cell types (for example non-thymic epithelia, dendritic cells) in the absence of thymic epithelial-cell support, provide strong evidence that thymic epithelial cells are uniquely efficient in their ability to drive maturation to the CD4+ and CD8+ stages. 28

Importantly, these studies highlight the fact that the induction of positive selection is dependent upon costimulatory signals in addition to those generated by TCR ligation, which appear to be provided specifically by thymic epithelial cells. The nature of the accessory signals involved in the process of positive selection are unknown. However, recent evidence suggests that there is a specific need for thymic epithelial cells during the induction of differentiation, rather than thymic epithelium merely providing survival signals to reveal some intrinsic differentiation event within CD4+ CD8+ TCRlow thymocytes themselves. 29 Thus, maturation of CD4+ CD8+ thymocytes whose in vitro lifespan has been extended as a consequence of expression of a bcl-2 transgene is still strictly dependent upon the presence of MHC class II+ thymic epithelial cells, and does not occur when they are reassociated with non-thymic stromal cells. 29

While the signals derived from thymic epithelial cells (which drive differentiation of CD4+ CD8+ thymocytes) is poorly understood, Ashwell et al. have proposed that steroid production by thymic epithelial cells may play a role in the positive-selection process by antagonizing TCR-driven signals that would otherwise result in the induction of apoptosis. Thus, pharmacological inhibition of glucocorticoid (GC) receptor signalling results in an increase in antigen-specific deletion, 30 while inhibiting GC production in FTOC causes thymocytes, which would normally undergo positive selection, to be triggered into apoptosis. 31 Such observations are strengthened by the detection of the key steroidogenic enzyme, p450scc, in cells present in the thymus. 30 Recently, however, we have shown that MHC class II+ thymic epithelial cells isolated from 2-deoxyguanosine (2-Guo)-treated embryonic thymus lobes, which efficiently support positive selection in RTOC, 16–18 do not express the p450scc enzyme. 32 However, perhaps surprisingly, p450scc mRNA was detected in thymocytes undergoing positive-selection events. 32 Thus, while these data do not rule out the possibility that steroid production plays a role in thymic-selection events, they argue against the notion that the specialization of thymic cortical epithelial cells for positive selection is critically dependent upon steroid biosynthesis.

Stromal cell requirements for negative selection

As well as demonstrating the importance of epithelial cells in intrathymic positive selection, several studies have analysed the stromal cell requirements for negative selection of CD4+ CD8+ thymocytes, which collectively suggest that there is also a degree of stromal cell specialization in this process. For example, using an MHC class II-restricted TCR transgenic (tg) RTOC-based system, Volkmann et al. 33 showed that a combination of thymic dendritic cells and antigenic peptide (in this case C5) resulted in effective deletion of CD4+ CD8+ thymocytes. Such observations on the effectiveness of dendritic cells for negative selection in RTOC agrees with previous studies of Jenkinson et al., 18 using the Vβ8-reactive superantigen, Staphycoccal enterotoxin B (SEB), and an FTOC microinjection system based on Mls1a-mediated deletion of Vβ6+ thymocytes, described by Mazda et al. 34

While it is clear from these FTOC-based studies that dendritic cells are effective mediators of negative selection, there is considerable controversy regarding the efficiency by which negative selection can be mediated by other cell types. Thus, both cortical and medullary cells appear to be capable of mediating negative selection in the C5 TCRtg system, 33 but in another study SEB presentation by thymic epithelial cells was unable to mediate deletion of CD4+ CD8+ Vβ8+ thymocytes. 18 Collectively then, these data suggest that under certain circumstances, perhaps particularly in the case of TCRtg mice expressing higher than normal levels of TCR resulting in high-avidity TCR–MHC interactions, a variety of cell types can mediate negative selection. However, for deletion of non-TCRtg CD4+ CD8+ thymocytes bearing low levels of αβTCR, a hierarchy may exist in relation to the ability of stromal cells to mediate negative selection, with dendritic cells being the most efficient. Indeed, further evidence for the specialization of dendritic cells in mediating negative selection comes from experiments in which small numbers of dendritic cells were titrated into RTOCs of epithelial cells and CD4+ CD8+ thymocytes. 35 In this study, the introduction of 1% dendritic cells – as a proportion of total thymus cellularity – was found to induce a maximal effect on the generation of CD4+ and CD8+ cells, with numbers being reduced by up to 75%, indicating that very few dendritic cells can have a potent effect on the outcome of thymic-selection events.

Collectively, these data suggest that the most efficient mediators of positive selection are thymic epithelial cells, while the most efficient mediators of negative selection are dendritic cells. The accessory molecules which are expressed by epithelial cells and dendritic cells and responsible for this specialization are not clear. However, several candidates such as CD80/CD86–CD28, 36 CD30-CD30L 37 and CD40-CD40L 38 have been suggested to play a role in negative selection in some cases. In contrast, data on the molecular interactions mediating positive selection is scarce, and so identification of the costimulatory molecules expressed by thymic epithelial cells remains an important area for study.

THE ROLE OF MHC-BOUND PEPTIDES IN POSITIVE and NEGATIVE SELECTION

As outlined above, although positive and negative selection share a common requirement for signalling through the αβTCR, it seems probable that the developmental outcome of such signalling is regulated by a number of events, such as the avidity of TCR–MHC interactions, duration of TCR ligation and differential activation of intracellular signalling pathways. 39 All of these parameters may depend on the nature of the αβTCR ligand for positive and negative selection, namely MHC molecules loaded with peptides derived from self-proteins. Experiments using FTOC have provided important information on the involvement of MHC-bound peptides in the discrimination between positive selection. Recent examples of such studies are summarized below.

Peptide specificity in positive and negative selection

FTOC experiments performed in the laboratories of Bevan40,41 and Tonegawa42,43 provided conclusive evidence that MHC class I-bound peptides play a direct role in influencing the developmental choice between positive and negative selection. However, while both groups showed that addition of exogenous peptides to either β2-microglobulin-deficient (β2m–/–) or transporter-associated protein 1-deficient (TAP-1–/–) FTOCs resulted in the rescue of positive selection of CD4 CD8+ cells, conflicting evidence was produced regarding the precise role of MHC-bound peptides in this process. Thus, Hogquist et al. provided evidence of a specific requirement for antagonist peptides in mediating positive selection,40,41 while Ashton-Rickardt et al. proposed an avidity-based model of T-cell selection, in which the developmental outcome of TCR ligation is dependent upon the number of TCRs engaged by peptide/MHC complexes. 42–44 Importantly, however, a number of studies have now shown that although low concentrations of MHC class I-bound agonist peptides can mediate phenotypic changes reminiscent of positive selection, this is not accompanied by the generation of functional T cells, which can be activated by the positively selecting peptide.45,46 In contrast, however, the generation of functional CD4+ T cells reactive to the same positively selecting MHC class II bound peptide has been observed. 47 Thus, it may be the case that peptides bound to MHC molecules influence positive selection via different mechanisms depending upon the specificity of the TCR for MHC class I or class II, with a role for agonist peptides in CD4+-positive selection and antagonist peptides in CD8+-positive selection.

Impact of peptide diversity on T-cell selection events

While the above studies clearly demonstrate the importance of peptides in positive and negative selection, until recently relatively little was known about the nature of the endogenous self-peptides mediating T-cell selection, and how important the diversity of MHC-bound peptides is for generation of a broad repertoire of TCR specificities. However, further information on the nature of self-peptides in T-cell selection will probably be forthcoming, because two recent studies have isolated endogenous peptides from MHC class I molecules with the capacity to induce positive selection of CD8+ T cells in β2m–/– or TAP1–/– FTOCs.48,49

With regard to the role of peptide diversity, Rudensky and colleagues have provided important evidence that low-abundance, diverse peptides play a key role in the generation of a diverse T-cell repertoire.50,51 Their studies utilize FTOCs from mice where the MHC class II-bound peptide repertoire is limited, for example in H-2M–/– mice, where the dominant peptide is invariant chain-derived class II-associated invariant chain peptide (CLIP). Thus, Grubin et al. 50 showed that blockade of positive selection induced by MHC class II/CLIP complexes in H-2M–/– FTOC using the specific antibody 30-2 resulted in an increase in the positive selection of CD4+ T cells, suggesting that low abundance, possibly diverse, peptides play an important role in generating a diverse pool of CD4+ T cells. In addition, introduction of H-2M–/– or wild-type dendritic cells into RTOCs of wild-type epithelial cells results in a 20% and 80% reduction, respectively, in the generation of CD4+ T cells. 34 Collectively then, these findings not only demonstrate the importance of peptide diversity in the efficiency of positive and negative selection, but also highlight the considerable degree of overlap that exists between positive- and negative-selection events.

Sustained interactions during thymic positive selection

In initial in vivo bromodeoxyuridine (BrdU) pulse-chase experiments analysing thymocyte precursor-product kinetics, it was noted that the there was a 3–4 day lag period before BrdU, initially incorporated by CD4+ CD8+ precursors, was detectable in CD4+ and CD8+ thymocytes. 9 Since then, accumulating evidence has indicated that this lag phase represents the duration of the positive-selection process, and it has become clear that CD4+ CD8+ thymocytes undergoing positive selection transit through a number of intermediate stages before the generation of functionally mature CD4+ and CD8+ T cells. In an important initial study, Bendelac et al.52 demonstrated that induction of positive selection is accompanied by transient expression of CD69 within the CD4+ CD8+ thymocyte subset, an early-activation marker that is also expressed after TCR ligation on mature T cells, 53 and that CD69 expression correlates with those cells which have up-regulated surface expression of the αβTCR complex. In addition, a number of studies subsequently showed that induction of CD69 expression during positive selection is dependent upon ligation of the αβTCR.15,54,55 In addition to induction of CD69 expression, positive selection is also accompanied by up-regulation of CD5, 56 gradual loss of CD4 in the generation of CD8+ T cells and gradual loss of CD8 in the generation of CD4+ T cells.57,58 Thus, CD4+ CD8+ CD69+, CD4lo CD8+ and CD4+ CD8lo subsets of thymocytes represent developmental intermediates in the positive-selection process. 59

Although the above studies indicate that positive selection of thymocytes is a multistage process, the interactions required for transition between these intermediate stages are poorly defined. However, a number of studies have now provided evidence that many of these intermediate events are still regulated by interactions with thymic stromal cells. 60–62 For example, by comparing development of CD4+ CD8+ CD69 thymocytes in RTOCs of wild-type and MHC-deficient (MHC–/–) thymic stromal cells, it is clear that the induction phase of positive selection is critically dependent upon interactions between the TCR and peptide/MHC. In contrast, development of CD4+ CD8+ C69+ thymocytes resulting in the generation of functionally mature CD4+ and CD8+ cells occurs in the presence of either wild-type or MHC–/– thymic stroma. 60 Collectively, these data indicate that once the induction phase of positive selection has occurred, phenotypic and functional maturation to the CD4+ and CD8+ stages occurs independently of further TCR–MHC interactions. Importantly, however, interactions with thymic stromal cells still appear to be required for the completion of positive selection and acquisition of functional maturation because CD4+ and CD8+ cells generated from bcl-2tg CD4+ CD8+ CD69+ precursors in the absence of thymic stroma are unable to respond to TCR ligation by proliferation. Thus, following the generation of CD4+ CD8+ CD69+ intermediates as a result of TCR–MHC interactions with thymic stromal cells, the generation of functionally mature CD4+ and CD8+ cells is independent of further TCR signalling, but still dependent upon additional accessory interactions provided by thymic stroma.

Concluding remarks

In the past few years, experiments employing FTOC methodology have provided significant insights into the cellular and molecular mechanisms regulating several aspects of thymocyte-positive and -negative selection. In particular, FTOC and RTOC methodology have been pivotal in the identification of stromal-cell specialization for positive- and negative-selection events, and in understanding how MHC-bound peptides influence the development of CD4+ CD8+ thymocytes. Recent modifications of organ culture technology, such as systems allowing retroviral gene transfer,63,64 strongly suggest that organ culture approaches will continue to be of considerable use in future studies on T-cell selection events.

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