Accelerating 4D flow MRI by exploiting vector field divergence regularization
Claudio Santelli
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Drs. Santelli and Loecher contributed equally to this work.
Search for more papers by this authorMichael Loecher
Department of Medical Physics, University of Wisconsin-Madison, Madison, Wisconsin, USA
Drs. Santelli and Loecher contributed equally to this work.
Search for more papers by this authorJulia Busch
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Search for more papers by this authorOliver Wieben
Department of Medical Physics, University of Wisconsin-Madison, Madison, Wisconsin, USA
Department of Radiology, University of Wisconsin-Madison, Madison, Wisconsin, USA
Search for more papers by this authorTobias Schaeffter
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Search for more papers by this authorCorresponding Author
Sebastian Kozerke
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Correspondence to: Sebastian Kozerke, Ph.D., Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich. E-mail:[email protected]Search for more papers by this authorClaudio Santelli
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Drs. Santelli and Loecher contributed equally to this work.
Search for more papers by this authorMichael Loecher
Department of Medical Physics, University of Wisconsin-Madison, Madison, Wisconsin, USA
Drs. Santelli and Loecher contributed equally to this work.
Search for more papers by this authorJulia Busch
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Search for more papers by this authorOliver Wieben
Department of Medical Physics, University of Wisconsin-Madison, Madison, Wisconsin, USA
Department of Radiology, University of Wisconsin-Madison, Madison, Wisconsin, USA
Search for more papers by this authorTobias Schaeffter
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Search for more papers by this authorCorresponding Author
Sebastian Kozerke
Imaging Sciences and Biomedical Engineering, King's College London, United Kingdom
Institute for Biomedical Engineering, University and ETH Zurich, Switzerland
Correspondence to: Sebastian Kozerke, Ph.D., Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich. E-mail:[email protected]Search for more papers by this authorAbstract
Purpose
To improve velocity vector field reconstruction from undersampled four-dimensional (4D) flow MRI by penalizing divergence of the measured flow field.
Theory and Methods
Iterative image reconstruction in which magnitude and phase are regularized separately in alternating iterations was implemented. The approach allows incorporating prior knowledge of the flow field being imaged. In the present work, velocity data were regularized to reduce divergence, using either divergence-free wavelets (DFW) or a finite difference (FD) method using the ℓ1-norm of divergence and curl. The reconstruction methods were tested on a numerical phantom and in vivo data. Results of the DFW and FD approaches were compared with data obtained with standard compressed sensing (CS) reconstruction.
Results
Relative to standard CS, directional errors of vector fields and divergence were reduced by 55–60% and 38–48% for three- and six-fold undersampled data with the DFW and FD methods. Velocity vector displays of the numerical phantom and in vivo data were found to be improved upon DFW or FD reconstruction.
Conclusion
Regularization of vector field divergence in image reconstruction from undersampled 4D flow data is a valuable approach to improve reconstruction accuracy of velocity vector fields. Magn Reson Med 75:115–125, 2016. © 2015 Wiley Periodicals, Inc.
Supporting Information
Additional Supporting Information may be found in the online version of this article.
Filename | Description |
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mrm25563-sup-0001-suppinfo1.docx1.7 MB | SUP. FIG. S1. Bland-Altman and linear correlation plots of peak flow measurements (R = 3). SUP. FIG. S2. Bland-Altman and linear correlation plots of peak flow measurements (R = 6). SUP. FIG. S3. Bland-Altman and linear correlation plots of total flow measurements (R = 3). SUP. FIG. S4. Bland-Altman and linear correlation plots of total flow measurements (R = 6). |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
REFERENCES
- 1 Markl M, Kilner PJ, Ebbers T. Comprehensive 4D velocity mapping of the heart and great vessels by cardiovascular magnetic resonance. J Cardiovasc Magn Reson 2011; 13: 7.
- 2 Markl M, Frydrychowicz A, Kozerke S, Hope M, Wieben O. 4D flow MRI. J Magn Reson Imaging 2012; 36: 1015–1036.
- 3 Pelc NJ, Herfkens RJ, Shimakawa A, Enzmann DR. Phase contrast cine magnetic resonance imaging. Magn Reson Q 1991; 7: 229–254.
- 4 Kilner PJ, Gatehouse PD, Firmin DN. Flow measurement by magnetic resonance: a unique asset worth optimising. J Cardiovasc Magn Reson 2007; 9: 723–728.
- 5
Pruessmann KP,
Weiger M,
Scheidegger MB,
Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn Reson Med 1999; 42: 952–962.
10.1002/(SICI)1522-2594(199911)42:5<952::AID-MRM16>3.0.CO;2-S CAS PubMed Web of Science® Google Scholar
- 6 Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, Kiefer B, Haase A. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 2002; 47: 1202–1210.
- 7 Lustig M, Pauly JM. SPIRiT: iterative self-consistent parallel imaging reconstruction from arbitrary k-space. Magn Reson Med 2010; 64: 457–471.
- 8 Kellman P, Epstein FH, McVeigh ER. Adaptive sensitivity encoding incorporating temporal filtering (TSENSE). Magn Reson Med 2001; 45: 846–852.
- 9 Tsao J, Boesiger P, Pruessmann KP. k-t BLAST and k-t SENSE: dynamic MRI with high frame rate exploiting spatiotemporal correlations. Magn Reson Med 2003; 50: 1031–1042.
- 10 Breuer FA, Kellman P, Griswold MA, Jakob PM. Dynamic autocalibrated parallel imaging using temporal GRAPPA (TGRAPPA). Magn Reson Med 2005; 53: 981–985.
- 11 Huang F, Akao J, Vijayakumar S, Duensing GR, Limkeman M. k-t GRAPPA: a k-space implementation for dynamic MRI with high reduction factor. Magn Reson Med 2005; 54: 1172–1184.
- 12 Liang ZP. Spatiotemporal imaging with partially separable functions. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, 2007. p 988–991.
- 13 Pedersen H, Kozerke S, Ringgaard S, Nehrke K, Kim WY. k-t PCA: temporally constrained k-t BLAST reconstruction using principal component analysis. Magn Reson Med 2009; 62: 706–716.
- 14 Lustig M, Donoho D, Pauly JM. Sparse MRI: the application of compressed sensing for rapid MR imaging. Magn Reson Med 2007; 58: 1182–1195.
- 15 Lustig M, Santos JM, Donoho DL, Pauly JM. k-t SPARSE: high frame rate dynamic MRI exploiting spatio-temporal sparsity. In Proceedings of the 14th Annual Meeting of ISMRM, Seattle, Washington, USA, 2006. Abstract 2420.
- 16 Barger AV, Block WF, Toropov Y, Grist TM, Mistretta CA. Time-resolved contrast-enhanced imaging with isotropic resolution and broad coverage using an undersampled 3D projection trajectory. Magn Reson Med 2002; 48: 297–305.
- 17 Mistretta CA, Wieben O, Velikina J, Block W, Perry J, Wu Y, Johnson K, Wu Y. Highly constrained backprojection for time-resolved MRI. Magn Reson Med 2006; 55: 30–40.
- 18 Baltes C, Kozerke S, Hansen MS, Pruessmann KP, Tsao J, Boesiger P. Accelerating cine phase-contrast flow measurements using k-t BLAST and k-t SENSE. Magn Reson Med 2005; 54: 1430–1438.
- 19 Gu T, Korosec FR, Block WF, Fain SB, Turk Q, Lum D, Zhou Y, Grist TM, Haughton V, Mistretta CA. PC VIPR: a high-speed 3D phase-contrast method for flow quantification and high-resolution angiography. AJNR Am J Neuroradiol 2005; 26: 743–749.
- 20 Jung B, Honal M, Ullmann P, Hennig J, Markl M. Highly k-t-space-accelerated phase-contrast MRI. Magn Reson Med 2008; 60: 1169–1177.
- 21 Holland DJ, Malioutov DM, Blake A, Sederman AJ, Gladden LF. Reducing data acquisition times in phase-encoded velocity imaging using compressed sensing. J Magn Reson 2010; 203: 236–246.
- 22 Velikina JV, Johnson KM, Wu Y, Samsonov AA, Turski P, Mistretta CA. PC HYPR flow: a technique for rapid imaging of contrast dynamics. J Magn Reson Imaging 2010; 31: 447–456.
- 23 Kim D, Dyvorne HA, Otazo R, Feng L, Sodickson DK, Lee VS. Accelerated phase-contrast cine MRI using k-t SPARSE-SENSE. Magn Reson Med 2012; 67: 1054–1064.
- 24 Giese D, Schaeffter T, Kozerke S. Highly undersampled phase-contrast flow measurements using compartment-based k-t principal component analysis. Magn Reson Med 2013; 69: 434–443.
- 25 Knobloch V, Boesiger P, Kozerke S. Sparsity transform k-t principal component analysis for accelerating cine three-dimensional flow measurements. Magn Reson Med 2013; 70: 53–63.
- 26 Tariq U, Hsiao A, Alley M, Zhang T, Lustig M, Vasanawala SS. Venous and arterial flow quantification are equally accurate and precise with parallel imaging compressed sensing 4D phase contrast MRI. J Magn Reson Imaging 2013; 37: 1419–1426.
- 27 Kwak Y, Nam S, Akcakaya M, Basha TA, Goddu B, Manning WJ, Tarokh V, Nezafat R. Accelerated aortic flow assessment with compressed sensing with and without use of the sparsity of the complex difference image. Magn Reson Med 2013; 70: 851–858.
- 28 Song SM, Napel S, Glover GH, Pelc NJ. Noise reduction in three-dimensional phase-contrast MR velocity measurements. J Magn Reson Imaging 1993; 3: 587–596.
- 29 Fatouraee N, Amini AA. Regularization of flow streamlines in multislice phase-contrast MR imaging. IEEE Trans Med Imaging 2003; 22: 699–709.
- 30 Skrinjar O, Bistoquet A, Oshinski J, Sundareswaran K, Frakes D, Yoganathan A. A divergence-free vector field model for imaging applications. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, USA, 2009. p 891–894.
- 31 Tafti PD, Delgado-Gonzalo R, Stalder AF, Unser M. Variational enhancement and denoising of flow field images. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Chicago, USA, 2011. p 1061–1064.
- 32 Busch J, Giese D, Wissmann L, Kozerke S. Reconstruction of divergence-free velocity fields from cine 3D phase-contrast flow measurements. Magn Reson Med 2013; 69: 200–210.
- 33 Loecher M, Kecskemeti S, Johnson KM, Turski P, Wieben O. Evaluation of divergence-free correction algorithms in high resolution 4-D flow images of cranial vasculature. In Proceedings of the 20th Annual Meeting of ISMRM, Melbourne, Australia, 2012. Abstract 1246.
- 34 Ong F, Uecker M, Tariq U, Hsiao A, Alley MT, Vasanawala SS, Lustig M. Robust 4D flow denoising using divergence-free wavelet transform. Magn Reson Med 2015; 73: 828–842.
- 35 Deriaz E, Perrier V. Divergence-free and curl-free wavelets in two dimensions and three dimensions: application to turbulent flows. J Turbul 2006; 7: 1–37.
- 36 Zhao F, Noll DC, Nielsen JF, Fessler JA. Separate magnitude and phase regularization via compressed sensing. IEEE Trans Med Imaging 2012; 31: 1713–1723.
- 37 Loecher M, Santelli C, Wieben O, Kozerke S. Improved L1-SPIRiT reconstruction with a phase divergence penalty for 3D phase-contrast flow measurements. In Proceedings of the 21st Annual Meeting of ISMRM, Salt Lake City, Utah, USA, 2013. Abstract 1355.
- 38 Ong F, Uecker M, Umar T, Hsiao A, Alley M, Vasanawala S, Lustig M. Compressed sensing 4D flow reconstruction using divergence-free wavelet transform. In Proceedings of the 22nd Annual Meeting of ISMRM, Milan, Italy, 2014. Abstract 0326.
- 39 Pelc NJ, Bernstein MA, Shimakawa A, Glover GH. Encoding strategies for three-direction phase-contrast MR imaging of flow. J Magn Reson Imaging 1991; 1: 405–413.
- 40 Ramani S, Fessler JA. Parallel MR image reconstruction using augmented Lagrangian methods. IEEE Trans Med Imaging 2011; 30: 694–706.
- 41 Daubechies I, Defrise M, De Mol C. An iterative thresholding algorithm for linear inverse problems with a sparsity constraint. Commun Pure Appl Math 2004; 57: 1413–1457.
- 42 Uecker M, Lai P, Murphy MJ, Virtue P, Elad M, Pauly JM, Vasanawala SS, Lustig M. ESPIRiT-an eigenvalue approach to autocalibrating parallel MRI: where SENSE meets GRAPPA. Magn Reson Med 2013; 71: 990–1001.
- 43 Samsonov AA, Kholmovski EG, Parker DL, Johnson CR. POCSENSE: POCS-based reconstruction for sensitivity encoded magnetic resonance imaging. Magn Reson Med 2004; 52: 1397–1406.
- 44 Bernstein MA, Zhou XJ, Polzin JA, King KF, Ganin A, Pelc NJ, Glover GH. Concomitant gradient terms in phase contrast MR: analysis and correction. Magn Reson Med 1998; 39: 300–308.
- 45 Giese D, Haeberlin M, Barmet C, Pruessmann KP, Schaeffter T, Kozerke S. Analysis and correction of background velocity offsets in phase-contrast flow measurements using magnetic field monitoring. Magn Reson Med 2012; 67: 1294–1302.