Volume 19, Issue 6-7 e2960
RESEARCH ARTICLE
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Association of ARHGAP22 gene polymorphisms with the risk of type 2 diabetic retinopathy

Rong Li

Rong Li

School of Life Sciences, Northwest University, Xi'an, Shaanxi, China

Department of Ophthalmology, the First Affiliated Hospital of Xi'an Medical University, Xi'an, Shaanxi, China

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Peng Chen

Peng Chen

Institution of Basic Medical Science, Xi'an Medical University, Xi'an, Shaanxi, China

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Jing Li

Jing Li

School of Life Sciences, Northwest University, Xi'an, Shaanxi, China

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Mengdan Yan

Mengdan Yan

School of Life Sciences, Northwest University, Xi'an, Shaanxi, China

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Jingjie Li

Jingjie Li

School of Life Sciences, Northwest University, Xi'an, Shaanxi, China

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Shanqu Li

Corresponding Author

Shanqu Li

Medical Examination Center of Tangdu Hospital, The Fourth Military Medical University, Xi'an, China

These authors contributed equally to this work.

Correspondence

Hongli Zhu, 229 Taibai Road, Xi'an 710069, Shaanxi, China.

Email: [email protected]

Shanqu Li, 1 Xinsi Road, Xi'an 710000, Shaanxi, China.

Email: [email protected]

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Hongli Zhu

Corresponding Author

Hongli Zhu

School of Life Sciences, Northwest University, Xi'an, Shaanxi, China

These authors contributed equally to this work.

Correspondence

Hongli Zhu, 229 Taibai Road, Xi'an 710069, Shaanxi, China.

Email: [email protected]

Shanqu Li, 1 Xinsi Road, Xi'an 710000, Shaanxi, China.

Email: [email protected]

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First published: 22 May 2017
Citations: 2

Abstract

Background

Little is known about the contribution of ARHGAP22 polymorphism to diabetic retinopathy (DR) risk. We performed a case–control study to investigate the associations between ARHGAP22 and the risk of DR in a Chinese Han population.

Methods

A total of 341 patients with type 2 diabetes mellitus (T2DM) were selected. All patients underwent a complete eye examination. Based on this, the patients with T2DM were divided into two subgroups: 188 patients with DR and 153 patients without DR. Five single nucleotide polymorphism (SNPs) were selected and genotyped using the MassARRAY method (Sequenom, San Diego, CA, USA). The odds ratio (OR) and 95% confidence intervals (CIs) were calculated by unconditional logistic regression adjusted for age and sex.

Results

Two susceptibility SNPs in ARHGAP22 were found to be associated with an increased risk of DR both before and after the adjustment: rs10491034 under the dominant model (adjusted OR = 0.51, 95% CI = 0.27–0.95, p = 0.032) and additive model (adjusted OR = 0.47, 95% CI = 0.26–0.84, p = 0.0098) and rs3844492 under the codominant model (adjusted OR = 3.14, 95% CI = 1.10–9.01, p = 0.023) and recessive model (adjusted OR = 3.52, 95% CI = 1.26–9.85, p = 0.011).

Conclusions

Our findings reveal a significant association between SNPs in the ARHGAP22 gene and DR risk in a Han Chinese population.

1 INTRODUCTION

Diabetic retinopathy (DR) is a severe chronic microvascular complication of diabetes mellitus (DM) and it may lead to blindness as a result of continuous blood leakage from retinal pericytes and endothelial cells if left untreated.1 DR is the leading cause of blindness among working adults in the western world2 and the overall prevalence of DR was reported to be 34.6% in patients with diabetes,3 which has been a global public health and economic problem. Although hyperglycemia, hypertension and dyslipidemia have been recognized as strong risk factors for DR,4-6 genetic factors also play an important role in its development and progression.

In recent decades, several studies have linked many varieties of genetic abnormalities with the onset and development of DR. Among them, angiotensin-converting enzyme (ACE), aldose reductase (AKR1B1), vascular endothelial growth factor (VEGF) and endothelial nitric oxide synthase (NOS3) gene polymorphisms were the most common susceptibility genes associated with the risk of DR.7-10 Recently, Rho GTPase-activating protein 22 (ARHGAP22) was reported to be involved in endothelial cell angiogenesis and increased capillary permeability and has also been considered as a new candidate gene associated with DR in a Taiwanese population.11 However, an insignificant association was detected in the distribution of ARHGAP22 polymorphisms between Indian DR cases and controls.12 By contrast, little is known about the contribution of the ARHGAP22 single nucleotide polymorphism (SNP) to DR risk in the Chinese Han population. We therefore performed a case–control study aiming to investigate the associations between ARHGAP22 SNPs and the risk of DR in a Chinese Han population.

2 MATERIALS AND METHODS

2.1 Ethics statement

The present study was conducted in strict obedience with the World Medical Association Declaration of Helsinki when using human tissue and when discussing the study protocol with subjects. The protocol was approved by the Ethical Committee of Tangdu Hospital. Each participant provided their written, informed consent.

2.2 Subjects

All participants in the present study were Han Chinese individuals who lived in Shaanxi Province. A total of 341 type 2 diabetes mellitus (T2DM) patients were consecutively recruited between June 2015 and June 2016 in the Tangdu Hospital, Xi'an, China. T2DM patients were diagnosed in accordance with the 2010 American Diabetes Association diagnostic criteria for diabetes,13 based on a fasting blood glucose >7 mmol/l, a causal blood glucose >11.1 mmol/l or a postprandial 2-h blood glucose >11.1 mmol/l following a 75-g oral glucose tolerance test, or a history of therapy for diabetes. All patients underwent a complete eye examination that included dilated retinal examination and fundus photography or fundus fluorescein angiography using a TRC-50DX Mydriatic Retinal Camera (Topcon Medical Systems, Oakland, NJ, USA). Patients were diagnosed with DR in accordance with the Early Treatment Diabetic Retinopathy classification.14 Patients with T2DM were divided into two subgroups: 188 patients with retinopathy (DR) and 153 patients without retinopathy (NDR). All the participants have at least 10 years history of T2DM. Demographic and clinical data including body mass index (BMI), fasting blood glucose (FBG), fasting insulin levels (INS), total cholesterol (TC), triglyceride level (TG), high-density lipoprotein cholesterol (HDLC) and low-density lipoprotein cholesterol (LDLC), urea, creatinine (Cr), cystatin-C (Cys-C) and other factors, including smoking and drinking status, antidiabetic agents and insulin usage, were recorded for each study participant.

2.3 SNP selection and genotyping

Candidate ARHGAP22 SNPs were selected from previous studies that associated polymorphisms with DR.11 SNPs with minor allele frequencies (MAF) > 5% in the HapMap CHB population were selected. We validated five SNPs in ARHGAP22. A GoldMag-Mini Purification Kit (GoldMag Co. Ltd, Xian, China) was used to extract genomic DNA from whole blood samples. DNA concentrations were measured using a DU530 ultraviolet/visible spectrophotometer (Beckman Instruments, Fullerton, CA, USA). Using MassARRAY Assay Design, version 3.0 (Sequenom, San Diego, CA, USA), we designed a multiplexed SNP MassEXTENDED assay.15 SNPs were genotyped using the standard protocol recommended by the manufacturer of the MassARRAY RS1000 (Sequenom) and data were analyzed using Typer, version 4.0 (Sequenom). The primers used in the present study are listed in Table 1.

Table 1. Primers used in the present study
SNP_ID 1st-PCRP 2nd-PCRP UEP_SEQ
rs1051509 ACGTTGGATGTGCTCCAACCATGCAGTTCC ACGTTGGATGGATATTTCCTGGGTAAGGGC tGTAAGGGCTAAGCGCT
rs3813864 ACGTTGGATGGGAAACTGGGTAGAGTGCAT ACGTTGGATGCAATCGCACATACAATGCCC ACAATGCCCACTCCC
rs10491034 ACGTTGGATGGCTATTAAGGAGGCTCCTTC ACGTTGGATGGACATTGACACTCCTGCTAC TGGTTAAAGCTCCTATAACTT
rs3844492 ACGTTGGATGACTTACCCTAGTCCCATTCC ACGTTGGATGAATGATACTGTCACCAGGGC TGCAAGACTCTTGCTTA
rs1822861 ACGTTGGATGCACACTCAGCATGTTTCTTG ACGTTGGATGTCTTGTCCTGATTCCAGACC CCGGCATGGAAACTGGA

2.4 Statistical analysis

We used Excel (Microsoft Corp., Redmond, WA, USA) and SPSS, version 17.0 (SPSS, Chicago, IL, USA) to perform the statistical analyses. p < 0.05 (two-sided) was considered statistically significant. All continuous data are presented as the mean ± SD. Pearson's chi-squared test and a Student's t-test were used to compare the distribution of categorical variables and continuous variables, respectively. Fisher's exact test was applied to each SNP in the controls to test for departure from Hardy–Weinberg equilibrium (HWE). Odds ratios (ORs) and 95% confidence intervals (CIs) for the allele and genotype frequencies were calculated using the Pearson chi-squared test adjusted for age and sex.16 PLINK software (http://pngu.mgh.harvard.edu/ purcell/plink) was used to assess SNP associations with DR risk in different genetic models (codominant, dominant, recessive, overdominat and additive). We used unconditional logistic regression analysis to calculate ORs and 95% CI adjusted for age and sex.17

3 RESULTS

We recruited 188 DR cases (90 males and 98 females; average age at diagnosis: 60.75 years) and 153 NDR controls (63 males and 90 females; average age: 53.82 years) for the present study. The clinical and biochemical characteristics of the cases and controls are shown in Table 2. Age, sex, BMI, smoking and drinking status, and antidiabetic agent usage of cases and controls were well-matched (p > 0.05). There is no significant difference in the distribution of FBG, INS, TC, HDLC, LDLC, urea, Cr and Cys-C levels between cases and controls (p > 0.05).

Table 2. Clinical characteristic of patients with T2DM
Characteristics DR (n = 188) NDR (n = 153) p-value
Sex 0.080
Female 90 63
Male 98 90
Duration of T2DM, years (mean ± SD) 21.44 ± 8.12 20.03 ± 7.84 0.076
Age, years (mean ± SD) 60.75 ± 12.33 53.82 ± 14.35 0.443
Smoking status 0.210
Yes 50 54
No 138 99
Drinking status 0.538
Yes 27 28
No 161 125
Taking antidiabetic 0.689
Yes 67 62
No 121 91
Insulin therapy 0.001*
Yes 133 55
No 55 98
BMI (kg/m2) 24.63 ± 3.45 25.18 ± 3.27 0.856
FBG (mmol/l) 10.08 ± 5.14 9.75 ± 4.07 0.057
HbA1c (%) 9.24 ± 2.47 9.39 ± 2.47 0.064
TC (mmol/l) 4.40 ± 1.21 4.89 ± 1.38 0.287
TG (mmol/l) 2.04 ± 1.42 3.05 ± 2.87 0.001*
LDL (mmol/l) 2.62 ± 0.88 2.96 ± 0.99 0.436
HDL (mmol/l) 2.09 ± 0.75 1.27 ± 0.85 0.157
Urea (mmol/l) 6.44 ± 2.33 6.32 ± 4.27 0.643
Cr (μmol/l) 67.08 ± 31.38 60.41 ± 25.11 0.559
Cys-C (mg/l) 0.86 ± 0.25 0.77 ± 0.21 0.137
ALBP (μg/l) 9.96 ± 8.84 9.71 ± 7.95 0.279
GFR (ml/min) 116.31 ± 33.66 131.14 ± 38.15 0.255
CP (ng/ml) 1.12 ± 0.74 1.67 ± 2.16 0.008*
INS (ulU/ml) 10.95 ± 4.77 10.55 ± 4.44 0.208
UCRP (nmol/mmol) 0.40 ± 0.33 0.40 ± 0.24 0.512
RBP (mg/l) 38.80 ± 11.48 38.75 ± 11.25 0.531
  • BMI, body mass index; FBG, fasting blood glucose; TC, total cholesterol; TG, triglyceride; LDL, low-density lipoprotein; HDL, high-density lipoprotein; Cr, creatinine; Cys-C, cystatin-C; ALBP, adipocyte lipid binding protein; GFR, glomerular filtration rate; CP, C-peptide; INS, fasting insulin levels; UCRP, urine C-peptide per 24-h urine; RBP, retinol binding protein.

A total of five ARHGAP22 SNPs were identified in the cases and controls. All SNP call rates exceeded 98.2%, which was considered sufficiently high to perform association analyses. In the controls, all SNPs were in HWE (p > 0.05) (Table 3). However, no associations were observed between the alleles and DR risk in an allele model.

Table 3. Basic information on candidate SNPs for DR
SNP id Chromosome Position Gene Alleles MAF HWE p-value DR NDR OR 95% ci p-value
A B DR NDR A B A B
rs1051509 chr10 49654195 ARHGAP22 G A 0.340 0.359 0.863 128 248 110 196 0.920 0.670–1.262 0.604
rs3813864 chr10 49659843 ARHGAP22 A G 0.239 0.281 0.696 90 286 86 220 0.805 0.571–1.135 0.216
rs10491034 chr10 49810367 ARHGAP22 T G 0.096 0.144 0.769 36 340 44 262 0.630 0.394–1.008 0.052
rs3844492 chr10 49822801 ARHGAP22 G A 0.293 0.248 0.291 110 266 76 230 1.251 0.889–1.761 0.198
rs1822861 chr10 49834326 ARHGAP22 G T 0.452 0.493 0.874 170 206 151 155 0.847 0.626–1.146 0.282
  • A, minor allele; B, reference allele; MAF, minor allelic frequency; HWE, Hardy–Weinberg equilibrium.

We also compared the genotype frequencies between cases and controls (Table 4). For SNP rs3844492, the genotype frequency distributions differed between cases and controls. Compared with the AA genotype, the GG frequency of rs3844492 polymorphism among cases was significantly different from controls (GG versus AA: OR = 3.043, 95% CI = 1.179–7.857, p = 0.021). After further adjustment by age and sex, the difference for the ‘GG’ genotype in rs3844492 remained significant (adjusted OR = 3.072, 95% CI = 1.096–8.611, p = 0.032), which suggested that the rs3844492 polymorphism had an increased effect on the risk of DR.

Table 4. Genotypes frequencies of the SNPs in ARHGAP22 and their associations with risk of DR
SNP id Genotype Genotype frequencies Without adjustment With adjustment
DR NDR Or (95% ci) p Or (95% ci) p
rs1051509 AA 79 (42.0%) 62 (40.5%) 1 1
GA 90 (47.9%) 72 (47.1%) 0.981 (0.623–1.546) 0.934 1.098 (0.683–1.767) 0.699
GG 19 (10.1%) 19 (12.4%) 0.785 (0.383–1.608) 0.508 0.813 (0.386–1.710) 0.585
rs3813864 GG 107 (56.9%) 78 (51.0%) 1 1
AG 72 (38.3%) 64 (41.8%) 0.820 (0.525–1.280) 0.383 0.832 (0.524–1.323) 0.438
AA 9 (4.8%) 11 (7.2%) 0.596 (0.234–1.509) 0.275 0.643 (0.245–1.686) 0.369
rs10491034 GG 152 (80.9%) 112 (73.2%) 1 1
TG 36 (19.1%) 38 (24.8%) 0.698 (0.416–1.171) 0.173 0.787 (0.459–1.349) 0.383
TT 0 (0.0%) 3 (2.0%)
rs3844492 AA 100 (53.2%) 83 (54.2%) 1 1
GA 66 (35.1%) 64 (41.8%) 0.856 (0.546–1.343) 0.499 0.861 (0.541–1.371) 0.529
GG 22 (11.7%) 6 (3.9%) 3.043 (1.179–7.857) 0.021 3.072 (1.096–8.611) 0.032
rs1822861 TT 62 (33.0%) 39 (25.5%) 1 1
GT 82 (43.6%) 77 (50.3%) 0.670 (0.403–1.112) 0.122 0.636 (0.374–1.081) 0.095
GG 44 (23.4%) 37 (24.2%) 0.748 (0.413–1.353) 0.337 0.715 (0.385–1.326) 0.287
  • a p-values were calculated from unconditional logistic regression analysis.
  • b p-values were calculated by unconditional logistic regression analysis with adjustments for age and sex.
  • * p ≤ 0.05 indicates statistical significance.

We assumed the minor allele of each SNP was a DR risk factor compared to the wild-type allele and analyzed associations between SNPs and DR in various inheritance models (Table 5). Two susceptibility SNPs were found to be associated with an increased risk of DR both before and after the adjustment: rs10491034 under the dominant model (adjusted OR = 0.51, 95% CI = 0.27–0.95, p = 0.032) and additive model (adjusted OR = 0.47, 95% CI = 0.26–0.84, p = 0.0098) and rs3844492 under the codominant model (adjusted OR = 3.14, 95% CI = 1.10–9.01, p = 0.023) and recessive model (adjusted OR = 3.52, 95% CI = 1.26–9.85, p = 0.011).

Table 5. Association analysis between gene popymorphism and risk of DR in multiple inheritance models (adjusted by sex and age)
SNP id Model Genotype DR NDR Or (95% ci) p-value AIC BIC
rs1051509 Codominant A/A 79 (41.8%) 65 (41.1%) 1 0.46 507.3 761.4
A/G 91 (48.1%) 74 (46.8%) 0.88 (0.51–1.54)
G/G 19 (10.1%) 19 (12%) 0.56 (0.23–1.39)
Dominant A/A 79 (41.8%) 65 (41.1%) 1 0.43 506.3 756.5
A/G-G/G 110 (58.2%) 93 (58.9%) 0.81 (0.48–1.37)
Recessive A/A-A/G 170 (90%) 139 (88%) 1 0.24 505.5 755.7
G/G 19 (10.1%) 19 (12%) 0.60 (0.25–1.42)
Overdominant A/A-G/G 98 (51.9%) 84 (53.2%) 1 0.94 506.9 757.1
A/G 91 (48.1%) 74 (46.8%) 0.98 (0.58–1.66)
Log-additive 0.80 (0.54–1.18) 0.26 505.6 755.8
rs3813864 Codominant G/G 107 (56.6%) 81 (51.3%) 1 0.2 505.7 759.8
A/G 73 (38.6%) 66 (41.8%) 0.65 (0.38–1.12)
A/A 9 (4.8%) 11 (7%) 0.52 (0.17–1.58)
Dominant G/G 107 (56.6%) 81 (51.3%) 1 0.081 503.8 754.1
A/G-A/A 82 (43.4%) 77 (48.7%) 0.63 (0.38–1.06)
Recessive G/G-A/G 180 (95.2%) 147 (93%) 1 0.39 506.1 756.4
A/A 9 (4.8%) 11 (7%) 0.62 (0.21–1.84)
Overdominant G/G-A/A 116 (61.4%) 92 (58.2%) 1 0.17 505 755.2
A/G 73 (38.6%) 66 (41.8%) 0.69 (0.41–1.18)
Log-additive 0.68 (0.45–1.05) 0.078 503.8 754
rs10491034 Codominant G/G 153 (81%) 113 (71.5%) 1 0.003 497.3 751.3
G/T 36 (19.1%) 41 (25.9%) 0.60 (0.32–1.14)
T/T 0 (0%) 4 (2.5%) 0.00 (0.00–Na)
Dominant G/G 153 (81%) 113 (71.5%) 1 0.032 502.3 752.5
G/T–T/T 36 (19.1%) 45 (28.5%) 0.51 (0.27–0.95)
Recessive G/G-G/T 189 (100%) 154 (97.5%) 1 0.0024 497.7 747.9
T/T 0 (0%) 4 (2.5%) 0.00 (0.00–Na)
Overdominant G/G-T/T 153 (81%) 117 (74%) 1 0.12 504.5 754.7
G/T 36 (19.1%) 41 (25.9%) 0.61 (0.32–1.15)
Log-additive 0.47 (0.26–0.84) 0.0098 500.2 750.4
rs3844492 Codominant A/A 100 (52.9%) 85 (53.8%) 1 0.023 501.4 755.4
G/A 67 (35.5%) 66 (41.8%) 0.76 (0.44–1.31)
G/G 22 (11.6%) 7 (4.4%) 3.14 (1.10–9.01)
Dominant A/A 100 (52.9%) 85 (53.8%) 1 0.91 506.9 757.1
G/A-G/G 89 (47.1%) 73 (46.2%) 0.97 (0.58–1.62)
Recessive A/A-G/A 167 (88.4%) 151 (95.6%) 1 0.011 500.4 750.6
G/G 22 (11.6%) 7 (4.4%) 3.52 (1.26–9.85)
Overdominant A/A-G/G 122 (64.5%) 92 (58.2%) 1 0.12 504.4 754.6
G/A 67 (35.5%) 66 (41.8%) 0.66 (0.39–1.11)
Log-additive 1.22 (0.82–1.81) 0.32 505.9 756.1
rs1822861 Codominant T/T 63 (33.3%) 42 (26.6%) 1 0.15 505.1 759.1
G/T 82 (43.4%) 78 (49.4%) 0.54 (0.28–1.01)
G/G 44 (23.3%) 38 (24.1%) 0.65 (0.32–1.34)
Dominant T/T 63 (33.3%) 42 (26.6%) 1 0.063 503.4 753.6
G/T-G/G 126 (66.7%) 116 (73.4%) 0.57 (0.32–1.04)
Recessive T/T-G/T 145 (76.7%) 120 (76%) 1 0.89 506.9 757.1
G/G 44 (23.3%) 38 (24.1%) 0.96 (0.52–1.75)
Overdominant T/T-G/G 107 (56.6%) 80 (50.6%) 1 0.12 504.4 754.6
G/T 82 (43.4%) 78 (49.4%) 0.66 (0.39–1.11)
Log-additive 0.80 (0.56–1.14) 0.22 505.4 755.6
  • AIC, Akaike's information criterion; BIC, Bayesian information criterion; NA, not available.
  • * p ≤ 0.05 indicates statistical significance.

4 DISCUSSION

An epidemiologic study of DR has shown that only 28.8% of diabetic patients develop retinopathy early,18 which suggested that genetic factors could promote the onset of retinopathy in diabetic patients. Genome-wide association studies (GWAS) have identified several susceptibility genes for DR; however, little information has been found about ARHGAP22 polymorphisms and the risk of DR, and the results are controversial.11, 12 In the present case–control study, we investigated the association between five ARHGAP22 SNPs and the risk of DR in the Chinese Han population. We found that SNP rs3844492 is associated with an increased risk of DR, whereas rs10491034 is associated with a decreased risk of DR.

ARHGAP22 is located at locus 10q11.22. The protein encoded by ARHGAP22 is insulin-responsive and is a member of the GTPase activating protein family.19 It is dependent on the kinase Akt and requires the Akt-dependent 14–3-3 binding protein, which binds sequentially to two serine residues. To date, multiple transcript variants encoding different isoforms have been found for this gene.20 In the present study, we found that genetic polymorphisms of ARHGAP22 are associated with DR risk, which may shed a new light on in-depth studies concerning this gene.

Earlier GWAS studies revealed two common variants (rs2300782 and rs10519765) that influence DR risk in populations of Mexican-Americans.21 Replication analysis for DR in Caucasian populations provided two SNPs (rs4865047 and rs1902491) that could be pursued in subsequent studies.22 However, none of the previously reported index SNPs has yet been validated in the East-Asian population. Subsequently, Chinese investigators have identified novel loci in the Chinese population, including rs9565164, rs1399634 and rs2380261.23 Japanese investigators also conducted GWAS studies for DR in a Japanese population and found rs9362054 in an intron of RP1-90 L14.1 showing borderline genome-wide significance.24 However, little information has been found about ARHGAP22 SNPs associated with DR in Chinese or Japanese populations. In the present study, we first showed that rs3844492 and rs10491034 in ARHGAP22 are associated with DR risk in a Chinese Han population. These results need be confirmed in the further studies with a larger sample size and different populations.

The present study has several potential limitations. First, the sample size is relatively small and the participants included only those from a Chinese population. Second, DR is a very heterogeneous disease with many other risk factors, including hyperglycemia, hypertension and dyslipidemia. We could not completely eliminate the potential influences of these factors on the results.

In summary, our results indicate that ARHGAP22 rs3844492 is associated with an increased risk of DR, whereas rs10491034 was associated with a decreased risk of DR in Chinese Han T2D patients. As a preliminary study with a small sample size, the conclusions drawn from our work must be viewed with caution; however, our observations are encouraging and certainly warrant more suitably powered studies of this relationship. Further studies aim to focus on validating our findings in large-scale East-Asian populations with long-term T2D follow-up data.

ACKNOWLEDGEMENTS

This work is supported by China Postdoctoral Science Foundation funded projects (2016 M592833). The authors have no conflicts of interest to report.

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