Volume 8, Issue 7 e70278
CASE SERIES
Open Access

Penile Cancer Distant Metastasis or Primary Lung Cancer? Using Focused Genomic Profiling of Tumor and Germline Mutations With Next-Generation Sequencing for Clinical Decision-Making

Christian A. Moen

Corresponding Author

Christian A. Moen

Department of Urology, Haukeland University Hospital, Bergen, Norway

Department of Clinical Medicine, University of Bergen, Bergen, Norway

Correspondence:

Christian A. Moen ([email protected])

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Ida M. Nordanger

Ida M. Nordanger

Department of Urology, Haukeland University Hospital, Bergen, Norway

Department of Clinical Medicine, University of Bergen, Bergen, Norway

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Ása Karlsdóttir

Ása Karlsdóttir

Department of Oncology, Haukeland University Hospital, Bergen, Norway

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Alfred Honoré

Alfred Honoré

Department of Urology, Haukeland University Hospital, Bergen, Norway

Department of Clinical Medicine, University of Bergen, Bergen, Norway

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Patrick Juliebø-Jones

Patrick Juliebø-Jones

Department of Urology, Haukeland University Hospital, Bergen, Norway

Department of Clinical Medicine, University of Bergen, Bergen, Norway

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Siri M. Blomberg

Siri M. Blomberg

Department of Radiology, Haukeland University Hospital, Bergen, Norway

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Torjan M. Haslerud

Torjan M. Haslerud

Department of Radiology, Haukeland University Hospital, Bergen, Norway

Department of Radiology, Nuclear Medicine, Stavanger University Hospital, Stavanger, Norway

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Christina Aamelfot

Christina Aamelfot

Department of Thoracic Medicine, Haukeland University Hospital, Bergen, Norway

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Pirjo-Riitta Salminen

Pirjo-Riitta Salminen

Section of Cardiothoracic Surgery, Department of Heart Disease, Haukeland University Hospital, Bergen, Norway

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Christian Beisland

Christian Beisland

Department of Urology, Haukeland University Hospital, Bergen, Norway

Department of Clinical Medicine, University of Bergen, Bergen, Norway

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Hildegunn H. Vetti

Hildegunn H. Vetti

Western Norway Familial Cancer Center, Haukeland University Hospital, Bergen, Norway and VID Specialized University, Faculty of Health Studies, Bergen, Norway

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Daniela E. Costea

Daniela E. Costea

Department of Clinical Medicine, University of Bergen, Bergen, Norway

Department of Pathology, Haukeland University Hospital, Bergen, Norway

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Ellen Berget

Ellen Berget

Department of Pathology, Haukeland University Hospital, Bergen, Norway

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First published: 15 July 2025

Funding: The authors received no specific funding for this work.

ABSTRACT

Background

The presence of a distant metastasis in penile squamous cell carcinoma (PSCC) is associated with a very poor prognosis. When isolated distant tumors are detected in patients with known PSCC, it is therefore important to accurately determine whether such lesions represent penile cancer metastasis or indeed a new primary cancer. This distinction can have a significant influence on both patient prognostication as well as recommended treatment regimens.

Cases

In this case series, we present three patients surgically treated for inguinal node-positive PSCC. Two of the patients developed isolated lesions in the right hilar lymph nodes within 14 months after surgery, and one patient had a concurrent lesion in the right upper lobe at the time of diagnosis. None of the standard radiological or histopathological examinations could truly identify the origin of these lesions. Moreover, neither could biomarker analysis with p16INK4a and human papillomavirus (HPV) DNA status. However, focused genomic profiling of both penile and thoracic tumor tissue with next generation sequencing (NGS) technology identified specific mutations in the TP53 gene (2 cases) and a potentially actionable mutation in the ERBB2 gene (1 case) that additionally could aid in distinguishing possible primary lung SCC from metastatic PSCC. No germline mutations were detected.

Conclusion

Focused NGS analysis of tumor tissue can provide molecular insights that may help clarify the possible origin of thoracic tumors in patients with PSCC. The results may support clinical decision-making and also be used for prognostication and patient counseling.

1 Introduction

The natural progression of penile squamous cell carcinoma (PSCC) has been described as an initial lymphatic spread to the inguinal and then to the pelvic lymph nodes [1]. Spread beyond this point has been defined as a distant metastasis and can involve the retroperitoneal/paraaortic and hilar glands as well as dissemination into visceral organs (notably the lungs) and bone [2-4].

Occasionally, isolated tumors involving hilar lymph nodes or lung tissue are discovered at initial work-up or during follow-up of PSCC. The question then arises whether such isolated tumors represent distant metastatic disease or indeed another primary malignancy. Accurate distinction between these two scenarios is important as it has a profound impact on patient prognosis as well as dictating the available and correct treatment options.

In this case series, we present three patients treated for inguinal node-positive PSCC at Haukeland University Hospital in 2022/23. Two patients developed isolated lesions in the right hilar lymph nodes within 14 months after surgery, and one patient had a concurrent lesion in the right upper lobe at the time of diagnosis. Cases were discussed in multidisciplinary team meetings (MDT), and treatment was provided as per their discretion. However, ordinary radiological and histopathological examinations could not really disclose the origin of these lesions. Thus, after patient consent, we retrospectively analyzed the hospital records for clinical variables and disease course. The human papillomavirus (HPV) status of tumor tissue from all tumors was determined by the multiplex-fluorescent HPV (f-HPV) typing kit (Genomed LTD, London, United Kingdom) which can detect DNA from the following HPV types: 6, 11, 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, and 68. In addition, all tumors underwent p16INK4a immunohistochemical staining using the JC2 clone (Cell Marque, California, USA). Furthermore, focused genomic profiling using the commercially available Oncomine Precision Assay (Thermo Fisher Scientific, Waltham, Massachusetts, USA) was performed in order to identify possible mutational signatures from both the penile and distant tumor. Currently, this next-generation sequencing (NGS) assay enables detection of 2769 different variants of hotspot mutations, copy number variations, and gene fusions across 50 cancer genes (Table 1). This assay, however, does not provide tumor mutational burden (TMB) or microsatellite instability (MSI) status. To also investigate for possible germline mutations, blood samples were analyzed using the TruSight Hereditary Cancer Panel (Illumina, San Diego, California, USA), a commercially available NGS panel that assesses germline mutations across 113 genes known to be associated with hereditary cancer development.

TABLE 1. Oncomine precision assay gene list.
DNA hotspot mutations
AKT1 CHEK2 FGFR3 KIT NTRK3
AKT2 CTNNB1 FGFR4 KRAS PDGFRA
AKT3 EGFR FLT3 MAP2K1 PIK3CA
ALK ERBB2 GNA11 MAP2K2 PTEN
AR ERBB3 GNAQ MET RAF1
ARAF ERBB4 GNAS MTOR RET
BRAF ESR1 HRAS NRAS ROS1
CDK4 FGFR1 IDH1 NTRK1 SMO
CDKN2A FGFR2 IDH2 NTRK2 TP53
CNVs Gene fusions
ALK FGFR1 ALK FGFR2 NTRK3
AR FGFR2 AR FGFR3 NUTM1
CD274 FGFR3 BRAF MET RET
CDKN2A KRAS EGFR NRG1 ROS1
EGFR MET ESR1 NTRK1 RSPO2
ERBB2 PIK3CA FGFR1 NTRK2 RSPO3
ERBB3 PTEN
  • Abbreviation: CNV, copy number variations.

Based on clinicopathological characteristics as well as tumor and germline genetics, we then discuss the possible etiology of these thoracic lesions.

2 Cases

2.1 Case 1

In June 2022, a previously healthy 57-year-old man was referred to the Haukeland University Hospital for examination due to a painful genital ulcer at the coronal sulcus. Biopsy revealed PSCC. Inguinal nodes were not palpable (cN0). Whole-body 18F-fluoro-2-deoxy-D-glucose positron emission tomography combined with computed tomography (FDG PET/CT) was performed preoperatively. Except for FDG uptake in the penile tumor and inguinal lymph nodes bilaterally, there were no other signs of disease. The patient underwent a partial penectomy and bilateral inguinal lymph node dissection (ILND), which revealed metastasis to one node on the right side and two nodes on the left side. A timeline of the patient's main events is shown in Figure 1. Clinicopathological characteristics are summarized in Table 2. FDG PET/CT performed after 3 months did not show any sign of pathology. A new FDG PET/CT after 7 months, however, showed isolated right hilar lymphadenopathy with multiple enlarged nodes (Figure 2A). Endobronchial ultrasound (EBUS) bronchoscopy identified an enlarged lymph node with impression into the lower lobe bronchus where an irregular mucosal surface was identified. Biopsy from this area revealed SCC. In MDT meetings, based on radiological (Figure 2A) and histopathological findings (Figure 3, panels A1—D1 and Figure 4A), it was not possible to conclude on the origin of the tumor. The case was treated as a Stage 3 (locally advanced) primary non-small cell lung cancer. The patient underwent concomitant radiochemotherapy (Cisplatin/vinorelbine) resulting in complete regression of the right hilar lymph nodes on FDG PET/CT. Since the tumor was PD-L1 positive (tumor proportion score 99% on immunohistochemical staining with the PD-L1 SP263 clone), he was then put on an immunotherapy regimen with an immune checkpoint inhibitor (durvalumab) once every 4 weeks for a year. However, this treatment had to be stopped after 4 months due to the development of pneumonitis, which was successfully treated with prednisolone. An FDG PET/CT performed 20 months after treatment of the thoracic lesions (27 months after surgery) did not show any residual disease. Currently, he is followed by surveillance with imaging every 6 months.

Details are in the caption following the image
Timeline of main events for three different penile cancer patients with inguinal lymph node metastasis who either developed hilar lymphadenopathy during follow-up (Case 1 and 2) or had a concurrent lung lesion in the upper right lobe at time of diagnosis (Case 3). ILND = Inguinal lymph node dissection; PET/CT = 18F-fluoro-2-deoxy-D-glucose positron emission tomography combined with computed tomography.
TABLE 2. Patient and tumor characteristics.
Case 1 Case 2 Case 3
Patient characteristics
Age (years) 57 68 55
Smoking status

Previously heavy smoker

(30/day for 30 years)

Previously smoker

(Periodically in his youth)

Previously heavy smoker

(20/day for 35 years)

Previous cancer diagnosis No No No
cN-stage at primary surgery cN0 cN0 cN0
Time to thoracic lesion discovery 7 months 14 months Concurrent
Primary tumor and ILND characteristics
Penile tumor size (mm) 3 14 55
Histological subtype Usual SCC Usual SCC Usual SCC
pT-stage T1a T2 T3
WHO grade G2 G3 G2
pN-stage

N2

(2 left, 1 right)

N2

(1 left, 1 right)

N1

(1 node left side)

LVI No Yes, extensive No
Resection margin R0 R0 R0
HPV DNA status Negative HPV-16 DNA positive Negative
p16INK4a Positive Positive Negative
Thoracic tumor characteristics
HPV DNA status Negative HPV-16 DNA positive Negative
p16INK4a Positive Positive Negative
  • Abbreviations: cN, Clinical N-stage; HPV, Human papillomavirus; ILND, Inguinal lymph node dissection; LVI, Lymphovascular invasion; pT-stage, Pathological tumor stage; SCC, Squamous cell carcinoma; WHO, World health organization.
Details are in the caption following the image
18F-fluoro-2-deoxy-D-glucose positron emission tomography combined with computed tomography (FDG PET/CT) images of thoracic lesions in three different penile cancer patients. (A) FDG PET/CT positive lesion in right hilar lymph nodes (arrows) present 7 months after the patient was treated for an inguinal node-positive penile cancer. (B) FDG PET/CT positive lesion in right hilar lymph nodes (arrows) present 14 months after the patient was treated for an inguinal node-positive penile cancer. (C) Concurrent FDG PET/CT positive lesion in right upper lobe (arrows) of a patient that were simultaneously diagnosed and treated for an inguinal node-positive penile cancer.
Details are in the caption following the image
Histopathological images at 20X magnification (all images have a width of 662 μm and a height of 470 μm, with a scale bar of 250 μm shown in all panels). (A1—A3) Images showing hematoxylin and eosin (H & E) staining of penile tumor tissue from three patients with penile cancer. (B1—B3) Corresponding images of the penile tumor tissue after staining with p16INK4a. (C1—C3) Images showing H & E staining of thoracic tumor tissue from the same three patients with penile cancer. (D1—D3) Corresponding images of the thoracic tumor tissue after staining with p16INK4a.
Details are in the caption following the image
Histopathological images showing the tumor invasion front in three patients with inguinal lymph node-positive penile cancer. Arrows indicate an example of tumor budding. (A) Patient (Case 1) with a TP53 mutation detected in the tumor tissue, (B) Patient (Case 2) with an ERBB2 mutation detected in the tumor tissue, (C) Patient (Case 3) with a TP53 mutation detected in the tumor tissue. All images taken at 20X magnification (with a width of 662 μm and a height of 470 μm. A scale bar of 250 μm is shown in all panels).

When investigated, the NGS analysis of tissue from the primary penile tumor and the right hilar lymph node biopsy revealed the same TP53 R273H (Ex 8, p.(Arg273His)) mutation, known to be oncogenic due to loss-of-function, in both tumors (Table 3). This would support the possibility that the thoracic lesion represented distant metastatic PSCC.

TABLE 3. Comparison of the results of the genomic profiling in primary penile cancer tissue and isolated thoracic tumor lesions.
Penile tumor mutations Thoracic tumor mutations
Case 1

TP53

R273H

Mutation

TP53

R273H

Mutation

Case 2

ERBB2

S310F

Mutation

ERBB2

S310F

Mutation

Case 3

TP53

R175H

Mutation

&

TP53

D184AfsTer62

Mutation

No mutation

Detected

With current

NGS panel

  • Abbreviations: ERBB, Erythroblastic oncogene B; NGS, Next-generation sequencing; TP, Tumor protein.

There were no germline mutations associated with cancer predisposition detected by the hereditary NGS cancer panel.

2.2 Case 2

In March 2023, a previously healthy 68-year-old man was referred to the Haukeland University Hospital for further investigation of an ulcer on the glans penis. There were no palpable inguinal nodes (cN0). A biopsy confirmed PSCC. A preoperative whole-body FDG PET/CT revealed uptake in the penile tumor only. Partial amputation and ILND bilaterally were performed after intraoperative frozen section analysis of the dynamic sentinel node biopsies (DSNB) revealed node-positive disease bilaterally. No additional inguinal lymph nodes contained cancerous tissue. A timeline of the patient's main events is shown in Figure 1. Clinicopathological characteristics are summarized in Table 2. An FDG PET/CT scan 8 months postoperatively was without any sign of recurrence. A new FDG PET/CT performed 14 months after surgery, however, showed right hilar lymphadenopathy with multiple enlarged nodes (Figure 2B). Biopsy by EBUS bronchoscopy confirmed SCC. It was again not possible to accurately assess the origin of the tumor. The histopathological findings are shown in Figure 3 (panels A2—D2) and Figure 4B. This specific case was, however, interpreted to be consistent with a distant PSCC metastasis. The patient underwent chemotherapy with a TIP regimen (cisplatin/paclitaxel/ifosfamide). He responded well to the treatment and is currently under active surveillance with imaging every 3–6 months.

Additional investigation confirmed the presence of HPV 16 DNA also in the hilar lymph node biopsy. Furthermore, NGS analysis revealed the same ERBB2 S310F (Ex 8, p.(Ser310Phe)) mutation, known to be oncogenic due to gain-of-function, in the penile and the distant tumor (Table 3). This supports the notion that the hilar lesion was likely distant metastatic PSCC.

No germline mutations associated with predisposition for cancer development were detected by the current NGS panel.

2.3 Case 3

In November 2023, a previously healthy 55-year-old man was referred to the Haukeland University Hospital due to a large tumor covering most of the penis. Inguinal palpation was normal (cN0). A biopsy confirmed PSCC. A preoperative FDG PET/CT revealed uptake in the penile tumor without any other sign of locoregional pathology. However, an isolated small FDG PET positive lesion was observed in the lung tissue of the right upper lobe (Figure 2C). During PSCC surgery a total penectomy was performed. Bilateral DSNB with peroperative frozen sectioning revealed a micrometastasis (1.1 mm) on the left side but a normal lymph node on the right side. However, due to a suspect lesion of the skin in the right groin (which turned out to be benign), ILND was performed bilaterally. No other nodes contained cancerous tissue. A timeline of the patient's main events is shown in Figure 1. Clinicopathological details are shown in Table 2. Following recovery of the penile cancer surgery, biopsy of the lung lesion confirmed SCC. Again, no ordinary radiological or histopathological (Figure 3, panels A3—D3 and Figure 4C) parameter could disclose the origin of the tumor. The patient underwent a formal right upper lobe lobectomy with lymph node sampling. Histopathology described an SCC without any positive nodes. It was concluded that if this was primary lung cancer it would be staged as T1bN0. He would then already have undergone necessary treatment. Currently, therefore, the patient is only followed by active surveillance with imaging every 6 months. He has fully recovered, and an FDG PET/CT performed 10 months after PSCC surgery was without any sign of recurrence.

NGS analysis of tissue from the primary penile tumor revealed two mutations of the TP53 gene. One mutation was TP53 R175H (ex 5, p.(Arg175His)) which is known to be oncogenic due to loss-of-function. The other mutation, TP53 D184AfsTer62 (Ex 5, p.(Asp184AlafsTer62)), is a truncating mutation that is likely oncogenic due to loss-of-function. NGS analysis of the SCC tumor of the lung tissue, however, did not reveal any mutations using the current NGS panel (Table 3). This would support the possibility that this patient in fact had two different primary tumors (lung and penis) at the time of PSCC diagnosis.

No germline mutations associated with cancer predisposition were detected by the hereditary NGS cancer panel.

3 Discussion

This case series investigated whether isolated thoracic tumors in patients with known PSCC represented distant metastasis or another primary cancer. A major challenge in the clinical setting was that the standard clinicopathological and radiological assessments were insufficient to determine the origin of the thoracic lesions. As a result, this led to differing interpretations and clinical management for each case, highlighting the need for additional diagnostic tools to accurately determine the origin of such lesions. The most significant finding of this study is the added value of performing focused NGS mutational analysis of both penile and distant tumors. This can produce additional evidence regarding the possible origin of distant lesions, thereby informing clinical decision-making and supporting more appropriate and standardized recommendations on further treatment regimens. It also offers valuable insights that can be used for prognostication and patient information.

In a publication by Leijte et al., all distant PSCC metastases occurred within 16 months of primary treatment [5]. Moreover, in a study by Chakiryan et al., the median time to development of a distant lung recurrence was 9 months, and this was also associated with a worse overall survival compared to any of the other distant metastasis sites [6]. This highlights the importance of being able to confirm the origin of new thoracic lesions in patients with known PSCC.

Penile cancer guidelines recommend evaluation of both HPV and p16INK4a status in penile cancer tissue [1]. Typically, HPV-positive tumors are also p16INK4a-positive, while HPV-negative tumors are p16INK4a-negative. The discrepancy in Case 1 (HPV-negative, p16INK4a-positive) remains unexplained, but it cannot be ruled out that this may be due to the presence of a more rare HPV type not included in the testing panel. Importantly, however, these biomarkers were consistent between the penile and distant tumors for all cases. If clinical decision-making was to be based on these findings alone, the lung lesion in Case 3 would have been defined as metastatic PSCC. However, primary lung SCC can be both HPV and p16INK4a positive [7]. Therefore, while discrepancies in these biomarkers could support different origins, similar findings cannot be used to conclude on the tumor origins.

Both patients with HPV negative penile cancer (Cases 1 and 3) had a TP53 mutation. TP53 mutations are known to be quite common in HPV negative, but rare in HPV positive, PSCC [8-11]. Additionally, as for Case 1, high PD-L1 expression was linked to HPV negativity in a recent study by Hrudka and colleagues [12]. In line with the advanced cases presented here, TP53 mutations have been associated with an aggressive form of PSCC which often shows a high tumor budding count at the invasive front [13-15]. Morphologically, tumor budding was observed at the invasive front of all three penile tumors in this study, but was most pronounced for the two cases with a TP53 mutation (Figure 4). Notably, the TP53 R273H mutation found in Case 1 has previously also been described in a case of head and neck squamous cell carcinoma (HNSCC) with development of hilar lymphadenopathy and a lung nodule [16].

The ERBB2 S310F mutation found in Case 2 is well known from cancers of the skin, urinary tract, and cervix [17]. Moreover, ERBB2 mutations have also been described in penile cancer and have been associated with aggressive disease [10, 18, 19]. Interestingly, ERBB2 mutations may represent actionable alterations and could serve as potential targets for future personalized treatment options [10, 19]. For penile cancer, however, there exists a broad spectrum of potentially druggable gene mutations, and the limited scope of our focused NGS panel precluded a comprehensive assessment of all of these relevant mutations [11, 20].

While the presence of identical mutations in both the primary tumor and the distant lesion can support a diagnosis of metastasis, it remains possible for common cancer-associated mutations to arise independently in each tumor. Additionally, due to mutational heterogeneity and the ongoing evolution of mutations as cancer cells proliferate, primary and metastatic tumors may exhibit overlapping yet distinct mutation profiles. Thus, while focused NGS analysis can provide important information for clinical decision-making, results must still be interpreted in the context of other case-specific results. In this setting, more comprehensive analyses such as whole-genome or whole-exome sequencing could also have provided additional information.

In a study by Necchi et al., it was estimated that about 7% of the genetic alterations detected in penile cancer tumor tissue were germline in origin [18]. While we did not find germline mutations in any of these three cases with advanced and aggressive PSCC, more research into the role of germline mutations in penile cancer should be performed.

Using NGS analysis for detection of potentially actionable mutations as well as measurement of circulating tumor DNA (ctDNA) for disease monitoring may provide a future personalized treatment strategy in PSCC [21]. NGS analysis, however, offers the possibility of detecting many different mutations that again could form the basis of numerous different treatment regimens. Including these patients in dedicated trials should therefore be considered [22]. Moreover, outcomes of these rare cancer cases should be registered in large databases to be able to reasonably understand which treatment regimens are truly effective within this vast mutational landscape.

Assuming the cancer had not spread to the hilar lymph nodes at the time of initial treatment, one could speculate if a prophylactic pelvic lymphadenectomy (pPLND) could have prevented such development. According to current guidelines, however, significant controversy remains regarding the role of pPLND, and based on current literature, this has not presently been recommended for the patients in this study [1]. Possibly, with more studies on the association between tumor genetics and disease course, genomic profiling of tumors could help in the risk stratification regarding which patients should undergo pPLND in the future.

4 Conclusion

Focused NGS analysis of tumor tissue can provide information that can help determine the possible origin of thoracic tumors in patients with penile cancer. The results can be used to inform clinical decision-making and may lead to a more standardized recommendation on further treatment regimens, while also offering information that can be used for prognostication and patient counselling.

Author Contributions

Christian A. Moen: conceptualization, data curation, formal analysis, investigation, methodology, project administration, resources, software, supervision, validation, visualization, writing – original draft, writing – review and editing. Ida M. Nordanger: data curation, formal analysis, investigation, methodology, validation, writing – review and editing. Ása Karlsdóttir: data curation, formal analysis, investigation, writing – review and editing. Alfred Honoré: data curation, formal analysis, investigation, writing – review and editing. Patrick Juliebø-Jones: data curation, formal analysis, investigation, validation, writing – review and editing. Siri M. Blomberg: data curation, formal analysis, investigation, software, validation, visualization, writing – review and editing. Torjan M. Haslerud: data curation, formal analysis, investigation, software, validation, visualization, writing – review and editing. Christina Aamelfot: data curation, formal analysis, investigation, validation, writing – review and editing. Pirjo-Riitta Salminen: data curation, formal analysis, investigation, validation, writing – review and editing. Christian Beisland: data curation, formal analysis, investigation, validation, writing – review and editing. Hildegunn H. Vetti: data curation, formal analysis, investigation, methodology, validation, writing – review and editing. Daniela E. Costea: conceptualization, data curation, formal analysis, investigation, methodology, validation, visualization, writing – review and editing. Ellen Berget: conceptualization, data curation, formal analysis, investigation, methodology, software, supervision, validation, visualization, writing – review and editing.

Ethics Statement

In accordance with local regulations, ethical board approval was not required for this type of research, but written informed consent was received from the patients for the publication of case details and use of images.

Conflicts of Interest

The authors declare no conflicts of interest.

Data Availability Statement

The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions.

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