Chapter 32
The Olavius algarvensis Metagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm
Manuel Kleiner,
Tanja Woyke,
Caroline Ruehland,
Nicole Dubilier,
Manuel Kleiner
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorTanja Woyke
Department of Energy Joint Genome Institute, Walnut Creek, California, USA
Search for more papers by this authorCaroline Ruehland
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorNicole Dubilier
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorManuel Kleiner,
Tanja Woyke,
Caroline Ruehland,
Nicole Dubilier,
Manuel Kleiner
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorTanja Woyke
Department of Energy Joint Genome Institute, Walnut Creek, California, USA
Search for more papers by this authorCaroline Ruehland
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorNicole Dubilier
Max Planck Institute for Marine Microbiology, Bremen, Germany
Search for more papers by this authorBook Editor(s):Frans J. de Bruijn,
Frans J. de Bruijn
Laboratory of Plant Micro-organism Interaction, CNRS-INRA, Castanet Tolosan, France
Search for more papers by this authorSummary
This chapter contains sections titled:
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Introduction
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Method Discussion: Challenges of Analyzing Co-Occurring Symbionts in Very Small Hosts
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Major Findings of the Study in Brief
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The Metagenome Revisited
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Conclusions
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Internet Resources for the O. Algarvensis Metagenome
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References
INTERNET RESOURCES FOR THE O. ALGARVENSIS METAGENOME
- Annotated metagenome on IMG/M: http://img.jgi. doe.gov/cgi-bin/m/main.cgi
- Binned and unbinned metagenomic scaffolds as. fasta files: http://genome.jgipsf.org/olaal/olaal.download. ftp.html
- Sequence reads in trace archive http://www.ncbi.nlm. nih.gov/Traces/trace.cgi?cmd=retrieve&val=ncbi_project_id%3D17779
- Project page on NCBI (the unbinned scaffold dataset (DS021618-DS022223) is incomplete on this website, all other datasets are complete): http://www.ncbi. nlm.nih.gov/bookshelf/br.fcgi?book=metagenomics &part=gutlessworm
- Metagenome on Camera (Project: Mediterranean Gutless Worm Metagenome): http://web.camera.calit2. net/cameraweb/gwt/org.jcvi.camera.web.gwt.down load.BrowseProjectsPage/BrowseProjectsPage.oa# ViewProject
- Metagenome on MG-RAST (metagenome ID: 44411 15.3): http://metagenomics.nmpdr.org/metagenomics. cgi
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