Volume 47, Issue 12 pp. 2714-2727
RESEARCH PAPER

Regional drivers of diversification in the late Quaternary in a widely distributed generalist species, the common pheasant Phasianus colchicus

Simin Liu

Simin Liu

State Key Laboratory of Biocontrol, School of Ecology/School of Life Sciences, Sun Yat-sen University, Guangzhou, China

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Yang Liu

Corresponding Author

Yang Liu

State Key Laboratory of Biocontrol, School of Ecology/School of Life Sciences, Sun Yat-sen University, Guangzhou, China

Correspondence

Yang Liu, State Key Laboratory of Biocontrol, School of Ecology/School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.

Email: [email protected]

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Edouard Jelen

Edouard Jelen

World Pheasant Association-France, Merville, France

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Mansour Alibadian

Mansour Alibadian

Research Department of Zoological Innovation, Institute of Applied Zoology, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran

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Cheng-Te Yao

Cheng-Te Yao

High Altitude Experimental Station, Endemic Species Research Institute, Nantou, Taiwan, China

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Xintong Li

Xintong Li

State Key Laboratory of Biocontrol, School of Ecology/School of Life Sciences, Sun Yat-sen University, Guangzhou, China

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Nasrin Kayvanfar

Nasrin Kayvanfar

Research Department of Zoological Innovation, Institute of Applied Zoology, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran

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Yutao Wang

Yutao Wang

School of Life and Geographic Science, Kashi University, Kashi, China

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Farhad S. M. Vahidi

Farhad S. M. Vahidi

Department of Animal Biotechnology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education, and Extension Organization, Karaj, Iran

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Jian-Lin Han

Jian-Lin Han

CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China

International Livestock Research Institute (ILRI), Nairobi, Kenya

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Gombobaatar Sundev

Gombobaatar Sundev

National University of Mongolia and Mongolian Ornithological Society, Ulaanbaatar, Mongolia

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Zhengwang Zhang

Zhengwang Zhang

Key Laboratory for Biodiversity Sciences and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China

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Manuel Schweizer

Manuel Schweizer

Naturhistorisches Museum Bern, Bern, Switzerland

Institute of Ecology and Evolution, University of Bern, Bern, Switzerland

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First published: 17 September 2020
Citations: 13

Handling Editor: Fumin Lei

Abstract

Aim

Pleistocene climate and associated environmental changes have influenced phylogeographic patterns of many species. These not only depend on a species’ life history but also vary regionally. Consequently, populations of widespread species that occur in several biomes might display different evolutionary trajectories. We aimed to identify regional drivers of diversification in the common pheasant, a widely distributed ecological generalist.

Location

Asia.

Taxon

Common pheasant Phasianus colchicus.

Methods

Using a comprehensive geographical sampling of 204 individuals from the species’ entire range genotyped at seven nuclear and two mitochondrial loci, we reconstructed spatio-temporal diversification and demographic history of the common pheasant. We applied Bayesian phylogenetic inference to describe phylogeographic structure, generated a species tree and inferred demographic history within and migration between lineages. Moreover, to establish a taxonomic framework, we conducted a species delimitation analysis.

Results

The common pheasant diversified during the Late Pleistocene into eight distinct lineages. It originated at the edge of the Qinghai–Tibetan plateau and spread to East and Central Asia. Only the widely distributed lowland lineage of East Asia displayed recent range expansion. Greater phylogeographic structure was identified elsewhere, with lineages showing no sign of recent demographic changes. One lineage in south-central China is the result of long-term isolation within a climatically stable but topographically complex region. In lineages from arid Central Asia and China, range expansions were impeded by repeated population fragmentation during dry glacial periods and by recent aridification.

Main conclusions

Spatio-temporal phylogeographic frameworks of widespread taxa such as the common pheasant provide valuable opportunities to identify divergent drivers of regional diversification. Our results suggest that diversification and population histories in the eight distinct evolutionary lineages were shaped by regionally variable effects of past climate and associated environmental changes. The evolutionary history of the common pheasant is best reflected by its being split into three species.

DATA AVAILABILITY STATEMENT

Detailed sample localities and GenBank accession numbers of (MT840913 - MT842838) of deposited DNA sequences are available in Table S1 in Supporting information. Input files for BEAST, IMa and BP&P analyses are available on DRYAD (https://doi.org/10.5061/dryad.1rn8pk0r9).

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