Proteome identification of binding-partners interacting with cell polarity protein Par3 in Jurkat cells
Ying Zhou
School of Life Science, East China Normal University, Shanghai 200062, China
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
These authors contributed equally to this work
Search for more papers by this authorLonghou Fang
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
These authors contributed equally to this work
Current address: Department of Medicine, University of California, San Diego, CA 92093, USA
Search for more papers by this authorDan Du
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorWenchao Zhou
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorXiujing Feng
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorJiwu Chen
School of Life Science, East China Normal University, Shanghai 200062, China
Search for more papers by this authorZhe Zhang
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorCorresponding Author
Zhengjun Chen
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
*Corresponding author: Tel, 86-21-54921081; Fax, 86-21-54921081; E-mail, [email protected]Search for more papers by this authorYing Zhou
School of Life Science, East China Normal University, Shanghai 200062, China
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
These authors contributed equally to this work
Search for more papers by this authorLonghou Fang
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
These authors contributed equally to this work
Current address: Department of Medicine, University of California, San Diego, CA 92093, USA
Search for more papers by this authorDan Du
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorWenchao Zhou
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorXiujing Feng
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Graduate School of the Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorJiwu Chen
School of Life Science, East China Normal University, Shanghai 200062, China
Search for more papers by this authorZhe Zhang
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
Search for more papers by this authorCorresponding Author
Zhengjun Chen
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
*Corresponding author: Tel, 86-21-54921081; Fax, 86-21-54921081; E-mail, [email protected]Search for more papers by this authorThis work was supported by grants from the National Natural Science Foundation of China (Nos. 30730055, 30700129 and 30623002) and the National Basic Research Program of China (No. 2007CB914504)
Current address: Department of Medicine, University of California, San Diego, CA 92093, USA
Abstract
The evolutionarily conserved cell polarity protein Par3, a scaffold-like PDZreontaining protein, plays a critical role in the establishment and maintenance of epithelial cell polarity. Although the role of Par3 in establishing cell polarity in epithelial cells has been intensively explored, the function of Par3 in hematopoietic cells remains elusive. To address this issue, we generated GST-fusion proteins of Par3 PDZ domains. By combiningthe GST-pull-down approach with liquid chromatography-tandem mass spectrometry, we identified 10 potential novel binding proteins of PDZ domains of Par3 in Jurkat cells (a T-cell line). The interaction of Par3 with three proteins—nuclear transport protein importin-α4 and proteasome activators PA28β and PA28γ—was confirmed using in vitro binding assay, co-immunoprecipitation assay and immunofluorescence microscopy. Our results have the potential to uncover novel functions of the cell polarity protein Par3 in blood cells.
References
- 1 Drubin DG, Nelson WJ. Origins of cell polarity. Cell 1996, 84: 335–344.
- 2 Knoblich JA. Mechanisms of asymmetric cell division during animal development. Curr Opin Cell Biol 1997, 9: 833–841.
- 3 Etemad-Moghadam B, Guo S, Kemphues KJ. Asymmetrically distributed Par3 protein contributes to cell polarity and spindle alignment in early C. elegans embryos. Cell 1995, 83: 743–752.
- 4 Bowerman B, Ingram MK, Hunter CP. The maternal Par genes and the segregation of cell fate specification activities in early Caenorhabditis elegans embryos. Development 1997, 124: 3815–3826.
- 5 Schober M, Schaefer M, Knoblich JA. Bazooka recruits inscuteable to orient asymmetric cell divisions in Drosophila neuroblasts. Nature 1999, 402: 548–551.
- 6 Wodarz A, Ramrath A, Kuchinke U, Knust E. Bazooka provides an apical cue for inscuteable localization in Drosophila neuroblasts. Nature 1999, 402: 544–547.
- 7 Nakaya M, Fukui A, Izumi Y, Akimoto K, Asashima M, Ohno S. Meiotic maturation induces animal-vegetal asymmetric distribution of aPKC and ASIP/PAR-3 in XenopusM oocytes. Development 2000, 127: 5021–5031.
- 8 Ebnet K, Suzuki A, Horikoshi Y, Hirose T, Meyer Zu Brickwedde MK, Ohno S, Vestweber D. The cell polarity protein ASIP/PAR-3 directly associates with junctional adhesion molecule (JAM). EMBO J 2001, 20: 3738–3748.
- 9 Takekuni K, Ikeda W, Fujito T, Morimoto K, Takeuchi M, Monden M, Takai Y. Direct binding of cell polarity protein Par3 to cell-cell adhesion molecule nectin at neuroepithelial cells of developing mouse. J Biol Chem 2003, 278: 5497–5500.
- 10 Lin D, Edwards AS, Fawcett JP, Mbamalu G, Scott JD, Pawson T. A mammalian Par3-Par6 complex implicated in Cdc42/Racl and aPKC signalling and cell polarity. Nat Cell Biol 2000, 2: 540–547.
- 11 Izumi Y, Hirose T, Tamai Y, Hirai S, Nagashima Y, Fujimoto T, Tabuse Y et al. An atypical PKC directly associates and colocalizes at the epithelial tight junction with ASIP, a mammalian homologue of Caenorhabditis elegans polarity protein Par3. J Cell Biol 1998, 143: 95–106.
- 12 Chen X, Macara IG. Par3 controls tight junction assembly through the Rac exchange factor Tiaml. Nat Cell Biol 2005, 7: 262–269.
- 13 Chen X, Macara IG. Par3 mediates the inhibition of LIM kinase 2 to regulate cofilin phosphorylation and tight junction assembly. J Cell Biol 2006, 172: 671–678.
- 14 Shi SH, Jan LY, Jan YN. Hippocampal neuronal polarity specified by spatially localized Mpar3/Mpar6 and Pi 3-kinase activity. Cell 2003, 112: 63–75.
- 15 Yoshii T, Mizuno K, Hirose T, Nakajima A, Sekihara H, Ohno S. sPar3, a splicing variant of Par3, shows cellular localization and an expression pattern different from that of Par3 during enterocyte polarization. Am J Physiol Gastrointest Liver Physiol 2005, 288: G564–G570.
- 16 Joberty G, Petersen C, Gao L, Macara IG. The cell-polarity protein Par6 links Par3 and atypical protein kinase C to Cdc42. Nat Cell Biol 2000, 2: 531–539.
- 17 Ludford-Menting MJ, Oliaro J, Sacirbegovic F, Cheah ET, Pedersen N, Thomas SJ, Pasam A et al. A network of PDZ-containing proteins regulates T-cell polarity and morphology during migration and immunological synapse formation. Immunity 2005, 22: 737–748.
- 18 Sambrook J, Irwin N, Janssen KA. Expression of cloned genes in Escherichia Coli. New York : Cold Spring Harbor Laboratory, 2001.
- 19 Graham FL, Van Der Eb AJ. A new technique for the assay of infectivity of human adenovirus 5 DNA. Virology 1973, 52: 456–467.
- 20 Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72: 248–5421.
- 21 Li C, Tan YX, Zhou H, Ding SJ, Li SJ, Ma DJ, Man XB et al. Proteomic analysis of hepatitis B virus-associated hepatocellular carcinoma: Identification of potential tumor markers. Proteomics 2005, 5: 1125–1139.
- 22 Gorlich D, Prehn S, Laskey RA, Hartmann E. Isolation of a protein that is essential for the first step of nuclear protein import. Cell 1994, 79: 767–778.
- 23 Imamoto N, Shimamoto T, Takao T, Tachibana T, Kose S, Matsubae M, Sekimoto T et al. In vivo evidence for involvement of a 5 8 kDa component of nuclear pore-targeting complex in nuclear protein import. EMBO J 1995, 14: 3617–3626.
- 24 Moroianu J, Hijikata M, Blobel G, Radu A. Mammalian karyopherin alpha 1 beta and alpha 2 beta heterodimers: alpha 1 or alpha 2 subunit binds nuclear localization signal and beta subunit interacts with peptide repeat-containing nucleoporins. Proc Natl Acad Sci USA 1995, 92: 6532–6625.
- 25 Dingwall C, Laskey RA. Nuclear targeting sequences—a consensus? Trends Biochem Sci 1991, 16: 478–481.
- 26 Makkerh JP, Dingwall C, Laskey RA. Comparative mutagenesis of nuclear localization signals reveals the importance of neutral and acidic amino acids. Curr Biol 1996, 6: 1025–1027.
- 27 Garcia-Bustos J, Heitman J, Hall MN. Nuclear protein localization. Biochim Biophys Acta 1991, 1071: 83–101.
- 28 Zhao LJ, Padmanabhan R. Nuclear transport of adenovirus DNA polymerase is facilitated by interaction with preterminal protein. Cell 1988, 55: 1005–1015.
- 29 Dingwall C, Sharnick SV, Laskey RA. A polypeptide domain that specifies migration of nucleoplasmin into the nucleus. Cell 1982, 30: 449–458.
- 30 Yang Y, Friih K, Ahn K, Peterson PA. In vivo assembly of the proteasomal complexes, implications for antigen processing. J Biol Chem 1995, 270: 27687–27694.
- 31 Orlowski M, Wilk S. Ubiquitin-independent proteolytic functions of the proteasome. Arch Biochem Biophys 2003, 415: 15–32.
- 32 Ma CP, Slaughter CA, DeMartino GN. Identification, purification, and characterization of a protein activator (PA28) of the 20 S proteasome (macropain). J Biol Chem 1992, 267: 10515–10523.
- 33 Dubiel W, Pratt G, Ferrell K, Rechsteiner M. Purification of an 11 S regulator of the multicatalytic protease. J Biol Chem 1992, 267: 22369–22377.
- 34 Ustrell V, Hoffman L, Pratt G, Rechsteiner M. PA200, a nuclear proteasome activator involved in DNA repair. EMBO J 2002, 21: 3516–3525.
- 35 Whitby FG, Masters El, Kramer L, Knowlton JR, Yao Y, Wang CC, Hill CP. Structural basis for the activation of 20S proteasomes by US regulators. Nature 2000, 408: 115–120.
- 36 Realini C, Jensen CC, Zhang Z, Johnston SC, Knowlton JR, Hill CP, Rechsteiner M. Characterization of recombinant REGalpha, REGbeta, and REGgamma proteasome activators. J Biol Chem 1997, 272: 25483–25492.
- 37 Rechsteiner M, Hill CP. Mobilizing the proteolytic machine: cell biological roles of proteasome activators and inhibitors. Trends Cell Biol 2005, 15: 27–33.
- 38 Tsukamoto T, Nigam SK. Cell-cell dissociation upon epithelial cell scattering requires a step mediated by the proteasome. J Biol Chem 1999, 274: 24579–24584.
- 39 Fang L, Wang Y, Du D, Yang G, Kwok TT, Kong SK, Chen B et al. Cell polarity protein Par3 complexes with DNA-PK via Ku70 and regulates DNA double-strand break repair. Cell Res 2007, 17: 572–574.
- 40 Davis GE, Koh W, Stratman AN. Mechanisms controlling human endothelial lumen formation and tube assembly in three-dimensional extracellular matrices. Birth Defects Res C Embryo Today 2007, 81: 270–285.
- 41 Shin K, Wang Q, Margolis B. PATJ regulates directional migration of mammalian epithelial cells. EMBO Rep 2007, 8: 158–164.
- 42 Young JC, Agashe VR, Siegers K, Haiti FU. Pathways of chaperone-mediated protein folding in the cytosol. Nat Rev Mol Cell Biol 2004, 5: 781–791.
- 43 Volker KW, Reinitz CA, Knull HR. Glycolytic enzymes and assembly of microtubule networks. Comp Biochem Physiol B Biochem Mol Biol 1995, 112: 503–514.
- 44 Vertessy BG, Orosz F, Kovacs J, Ovadi J. Alternative binding of two sequential glycolytic enzymes to microtubules. Molecular studies in the phosphofructokinase/aldolase/microtubule system. J Biol Chem 1997, 272: 25542–25546.
- 45 Navarro-Lerida I, Martinez Moreno M, Roncal F, Gavilanes F, Albar JP, Rodriguez-Crespo I. Proteomic identification of brain proteins that interact with dynein light chain LC8. Proteomics 2004, 4: 339–346.
- 46 Real E, Faure S, Donnadieu E, Delon J. Cutting edge: atypical PKCs regulate T lymphocyte polarity and scanning behavior. J Immunol 2007, 179: 5649–5652.
- 47 Martin-Belmonte F, Mostov K. Phosphoinositides control epithelial development. Cell Cycle 2007, 6: 1957–1961.
- 48 Harris TJ, Peifer M. The positioning and segregation of apical cues during epithelial polarity establishment in Drosophila. J Cell Biol 2005, 170: 813–823.