Applying evidence in the real world: a case study in library and information practice
Abstract
Background/objectives: Methodological decisions made during the research process can influence generalizability of findings to real world practice. The aims of this study were to explore the impact of decisions made in the development of a palliative care search filter and to consider the implications for implementation.
Methods: Three elements of the original study methodology were explored: (i) choice of OVID medline field delimiters; (ii) use of the general medical literature to evaluate the filter's performance; and (iii) use of the OVID interface. Sensitivity, specificity, accuracy and precision rates of variant search strategies were compared to consider each issue.
Results: The delimiter .af. outperformed the alternatives of .tw. or .mp. in OVID medline, improving sensitivity from 45.4 to 46.2%. Applying the filter in the specialist palliative literature resulted in 87.5% (692/791) of articles being retrieved using either .tw. or .mp., increasing to 100% (791/791) with the .af. delimiter. Finally, a PubMed version of the filter was successfully validated.
Conclusions: Reviewing three methodological decisions that preserved validity in an original study led to the improved utility of a search filter in practice. Generating high-quality evidence is only part of evidence-based practice: consideration of generalizability issues can inform further research and effective evidence implementation.
Introduction
Previously, we reported the development and validation of a search filter to find information relevant to palliative care in the general medical literature using the OVID medline database. Using a method where performance of a search strategy is compared with a gold standard reference set of hand-searched journal articles, we validated the performance of a particular strategy, called the Master Search. This search consisted of 12 search terms [9 Medical Subject Headings (MeSH) terms and three textwords] combined with the Boolean OR operator (column 1, Table 1).1 In our judgement, this search represented the best compromise between sensitivity and precision. Given that implementation of evidence is as integral to evidence-based practice as research evidence is,2 we now consider issues related to making this evidence available for use ‘in the real world’. In particular, we identify three issues relating to the generalizability of our findings and consequent implications for the utility of the search, report the results of some bibliometric analyses and detail progress in translating this evidence into practice.
Original OVID medline syntax | Equivalent PubMed syntax |
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exp advance care planning/OR | advance care planning[mh] OR |
exp attitude to death/OR | attitude to death[mh] OR |
exp bereavement/OR | bereavement[mh] OR |
death/OR | death[mh:noexp] OR |
hospices/OR | hospices[mh] OR |
life support care/OR | life support care[mh] OR |
palliative care/OR | palliative care[mh] OR |
exp terminal care/OR | terminal care[mh] OR |
terminally ill/OR | terminally ill[mh] OR |
palliat$.tw. OR | palliat*[tiab] OR |
hospice$.tw. OR | hospice*[tiab] OR |
terminal care.tw. | terminal care[tiab] |
- $ is the truncation symbol used by OVID; * is used by PubMed.
- Both searches, when restricted to the original parameters, retrieved 481 citations.
Efficacy versus effectiveness
Generalizability of findings is an important issue for all health research. One criticism of randomized controlled trials investigating the efficacy of interventions, for example, is that the initial selection of study participants is usually such that certain people are excluded.3 While this may be necessary to ensure the internal validity of a trial, it also limits external validity; that is, the generalizability of results. This means that a trial's results may not be immediately generalizable to many of the patients actually seen in clinical practice.4,5 Conversely, a criticism of randomized controlled trials investigating the effectiveness of interventions, is that some rigour may be sacrificed in order to achieve improved generalizability.
Similarly, methodological choices underpinned the validation of the Master Search palliative care filter. Ultimately, these decisions support the internal validity of the findings, but they also have implications for generalizability.
Objectives
The objective of the current study was to identify and explore the possible implications of several key decisions with a view to improving the relevance and generalizability of the search filter. Three such issues were identified and investigated. These are summarized in Table 2.
Methodological decision* | Generalizability issues based on our knowledge/experience/opinion | Current strategy† |
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The field delimiter of .tw. was used in the Master Search rather than the alternative .mp. or .af. to allow the testing of the MeSH terms which would have been obscured using the alternative delimiters | Suggest it is (i) unlikely a searcher will choose the .tw. delimiter and (ii) other options such as .mp. or .af. might perform better. | Examine the differences in the performance of the Master Search by comparing retrieval rates using .tw. .mp. and .af. |
The original Master Search was validated by comparing retrieval rates against a gold standard reference set based on four general medical journals. | Suggest most searchers want to search all literature, not just the general medical journals. Yet the performance of the Master Search in the specialist palliative literature remains unknown. To be maximally useful, a palliative search filter needs to perform well across both the generalist and specialist literature. | Test the Master Search's performance using a core set of specialist palliative journals |
OVID medline, a subscription-based version of medline was used to validate the Master Search. | The Master Search is not directly transferable to PubMed, the most widely used freely available version of medline. It uses different syntax and default searching rules, e.g. mapping. Suggest it is unlikely most searchers will know how to do create an equivalent search. | Validate a PubMed version of the Master Search |
- * As reported in the original study,1
- † †As investigated in this study.
First, the three textwords in the Master Search were originally restricted to the search field of .tw. (textword), rather than using the .mp. (title, original title, abstract, name of substance word, subject heading) default in OVID for non-MeSH term searching. The basis for this decision was that .mp. would search for textwords in several fields, including MeSH terms, but this would obscure some of the very detail we sought, to assess for example, the performance of individual MeSH terms in retrieving relevant citations. In the real world, however, if searchers do utilize the .tw. (textword) restriction or, as is more likely, the default .mp. delimiter, they may not be exploiting OVID's software functionality to maximize citation retrieval. In particular, using .af. (all fields) would enable a searcher to find textwords occurring in any field, possibly maximizing sensitivity further. Given the textwords used in the filter (palliat$, hospice$ or terminal care) are almost certainly uniquely palliative (compared with, for example, the textword ‘hand’ which can have multiple uses and meanings), the .af. option may be particularly yielding.
Second, the Master Search was originally developed to find relevant palliative care content in the general medical literature (Annals of Internal Medicine, British Medical Journal, Journal of the American Medical Association, The Lancet). Reasonably, searchers will also want citations indexed in the specialized palliative care journals, such as the Journal of Palliative Care, Journal of Palliative Medicine and BMC Palliative Care. While we might expect the Master Search would be most effective for these citations, it is in fact unknown.
Third, while OVID medline was chosen as the medline interface, many searchers use PubMed. Not only is there a difference in journal coverage (for example, BMC Palliative Care is indexed on PubMed and not OVID medline), but they both use different software. To maximize use of a validated search, it should be available for use in both interfaces. However, there needs to be some validation process to ensure the equivalency of the Master Search.
We sought to explore these three issues further using bibliometric analyses to:
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determine if use of ‘af’ instead of ‘tw’ or ‘mp’ would improve the performance of the Master Search in the general medical literature;
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investigate how the Master Search performs in palliative care journals;
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develop a PubMed equivalent version of the original Master Search.
Methods
Issue 1: delimiters (.af. versus .mp. versus .tw.)
All searching was undertaken on OVID medline 1950 to May week 5 2007, on 13 June 2007. The Master Search (consisting of all 12 terms) was run three times, changing the delimiter used for the three textword terms from .tw. to .mp. and then .af., respectively. Each of the three textword terms was also searched individually with the variant delimiters. Each of these searches was restricted to four general medical journals (Annals of Internal Medicine, British Medical Journal, Journal of the American Medical Association, The Lancet) from 1999 to 2001. Citations retrieved were then compared with the original gold standard reference set of articles (n = 773) identified as being published in those journals and date ranges. Sensitivity, specificity, precision and accuracy rates were calculated (see Table 3 for definitions).
Gold standard reference set | ||
---|---|---|
Relevant | Not relevant | |
medline result | ||
Articles retrieved | a (correct inclusion) | b (incorrect inclusion) |
Articles not retrieved | c (incorrect exclusion) | d (correct exclusion) |
Where | ||
sensitivity = a/(a + c); specificity = d/(b + d); precision = a/(a + b); accuracy = (a + d)/(a + b + c + d) |
- Reprinted with permission.1
Issue 2: palliative care journals
OVID medline was searched as described above using three variations of the Master Search; however, results were restricted to three palliative-specific journals: Journal of Palliative Care, Journal of Palliative Medicine and Palliative Medicine (2002 to 2004). These were selected from a list of 51 journals previously identified as publishing literature relevant to palliative care by the National Reference Group for the Evidence-Based (Palliative Care) Project as part of the review of the literature base for the project.6 Journal titles were selected from this list if they were English, peer reviewed, indexed on OVID medline and PubMed, contained solely palliative care content and had a medical focus. Although we assumed all content in palliative-specific journals would be relevant and therefore should be retrieved by the filter, any references that were not retrieved by the Master Search were independently reviewed by two individual researchers to confirm their relevance. Where there was disagreement, articles were evaluated by a third reviewer.
Issue 3: equivalency of PubMed and OVID medline searches
An equivalent of the original OVID medline Master Search was constructed by a medical librarian (RMS) for PubMed. Each term was rechecked in the MeSH thesaurus. As terms entered into PubMed are automatically exploded, this was disabled for the one MeSH term with subordinate terms that was not originally exploded, namely death. All other MeSH terms were given the delimiter [mh], which automatically included the explode functionality (where subordinate terms existed). Those textwords originally given the OVID medline delimiter of .tw. were given the PubMed delimiter of [tiab]. The PubMed Master Search is reported in column 2 of Table 1. It was run on PubMed and restricted to the same general medical journals (and publication years) as used in the validation of the original OVID medline Master Search. The PubMed Master Search was validated by comparing the overall number of articles retrieved to those retrieved using the OVID medline Master Search. The same method was repeated to validate the OVID medline Master Search using the.af. delimiter as opposed to the .tw. delimiter.
Results
Issue 1: delimiters (.af. versus .mp. versus .tw.) on OVID medline
Table 4 provides sensitivity, specificity, precision and accuracy rates in relation to the performance of textword and Master Searches using the three variant delimiters compared with the original gold standard search. The best performing delimiter for palliat$ was .af. (sensitivity = 126/773, 16.3%) and for hospice$ was .af. (sensitivity = 35/773, 4.5%). However, for terminal care, sensitivity was the same using either .mp. or .af. (102/773, 13.2%).
Search terms | Sensitivity % | Specificity % | Precision % | Accuracy % |
---|---|---|---|---|
Palliat$* | ||||
.tw. | 7.37 | 99.98 | 90.48 | 97.09 |
.mp. | 15.39 | 99.90 | 82.64 | 97.26 |
.af. | 16.30 | 99.89 | 82.35 | 97.28 |
Hospice$* | ||||
.tw. | 02.59 | 100.00 | 100.00 | 96.97 |
.mp. | 04.27 | 99.99 | 94.29 | 97.02 |
.af. | 04.53 | 99.99 | 92.11 | 97.02 |
Terminal care | ||||
.tw. | 00.39 | 100.00 | 100.00 | 96.91 |
.mp. | 13.20 | 99.95 | 89.47 | 97.25 |
.af. | 13.20 | 99.95 | 89.47 | 97.25 |
Master Search† | ||||
.tw. | 45.41 | 99.46 | 72.97 | 97.76 |
.mp. | 45.41 | 99.46 | 72.97 | 97.76 |
.af. | 46.18 | 99.45 | 73.01 | 97.78 |
- * Single textword terms only.
- † Master Search containing nine MeSH terms and the three textwords terms (all combined using the Boolean OR operator) with each delimiter variant.
For the Master Search, .af. resulted in only marginal improvement of sensitivity from 351/773 (45.41%) to 357/773 (46.18%). In real terms, this reflected the additional retrieval of eight citations, six of which were in the gold standard reference set. As only two irrelevant citations were received, this resulted in the precision increasing from 72.97 to 73.01%. Inspection of the complete reference for each of these articles revealed that the term palliat$ (n = 8) or hospice$ (n = 1) appeared in the author's institution field; for example ‘Hertzberg Palliative Care Institute’.
Issue 2: palliative care journals
A total of 791 articles were indexed in the Journal of Palliative Care, Palliative Medicine and Journal of Palliative Medicine from 2002–2004. The original Master Search using .tw. retrieved 87.5% (692/791) records. Therefore, 12.5% (99/791) in palliative-specific journals were not indexed with any of the terms included in the Master Search. The Master Search using .mp. achieved the same sensitivity of 87.5% (692/791), but when the Master Search with .af. was used, this increased to 100% (791/791), representing retrieval of the additional 99 records.
Both the bibliographic citations and the full-text articles for the additional 99 citations published in palliative journals were reviewed. The review of individual citations revealed that one of the textwords from the search strategy was included in at least one of the journal-related fields as follows: Abbreviated Source or NLM Journal Name (n = 99), the institution field (n = 25), the author field (n = 1) or general notes field (n = 1). Collectively, these provide explanation as to why each record was retrieved using the .af. delimiter and not the .tw. or .mp. delimiters.
In terms of relevance to palliative care, two independent reviewers read each full-text article. They agreed that 81/99 (81.8%) were definitely relevant and 1/99 (1.00%) was definitely not relevant. All remaining records (17/99, 17.2%), for which there was either no agreement or the reviewers were both unsure, were evaluated by a third independent reviewer. This resulted in an additional nine relevant articles, elevating the number of overall relevant articles that were missed to 90/99 (91.0%). No further articles were identified as clearly not relevant to palliative care. There was continuing disagreement or uncertainty regarding the remaining eight records.
Issue 3: equivalency of PubMed and OVID medline master searches
An identical number of records were retrieved using the original OVID medline Master Search and its PubMed translation (n = 481). Cross-checking the results of both searches confirmed that these were the same records. When the .tw. delimiter in the OVID medline Master Search was replaced by the .af. delimiter, and the PubMed delimiter of [ti/ab] was replaced by [all fields], the yield was again identical (n = 489), retrieving an additional eight records as reported earlier for the OVID medline search. It is not possible to create an equivalent search for the delimiter .mp. in PubMed, which searches across the title, abstract and subject heading words of records.
Discussion
This case study illustrates the need for caution in relation to implementing research evidence. Our analysis of three key methodological decisions, made in the creation of a specialist search filter, confirmed the proposition underlying this study. Namely, in the same way that evidence needs to be appraised for its generalizability before applying it in clinical practice, so must it be in library and information practice. The original filter was, we believe, an example of good-quality evidence. However, the parameters used in its generation had implications for its generalizability. In this case, we identified three issues with a potential to influence implementing this evidence in the real world practice of searching for palliative care literature. The original choices of search delimiters, journal titles and database interfaces all impacted on the generalizability of the evidence.
It has been demonstrated that sensitivity could be improved marginally by using the delimiter of .af., without compromising precision. Indeed, a slight improvement in precision was achieved. However, the overall sensitivity was still unacceptably low, highlighting our original finding that further effort is needed to identify MeSH terms, textwords and phrases that can contribute to improving the search strategy. Importantly, the investigation of the filter's performance in the specialist palliative journals (where all content might be seen as being relevant), revealed that MeSH indexing terms do not necessarily capture the full content. While the use of .af. goes some way toward overcoming the deficit, it relies on one of the core textwords appearing in the journal title or institutional field. However, this is still suboptimal because some journals, such as the Journal of Pain and Symptom Management, publish a large number of highly relevant palliative care papers, yet none of the three textwords is contained in the journal titles. Understanding why some content is not indexed as palliative and what combination of terms is implicitly palliative still remains fundamental to improving the efficacy of the filter. In the interim, specifying search terms for a palliative-specific list of journals in addition to the Master Search using .af. may ensure the most comprehensive retrieval of palliative care literature.
Therefore, on the basis of research reported so far, and in consideration of generalizability, we offer two key suggestions for those requiring exhaustive searches for palliative care literature in medline, such as those undertaking systematic reviews. First, the delimiter ‘all fields’ (.af. for OVID medline and [all fields] for PubMed) should be used for uniquely palliative textwords to maximize sensitivity from both the general medical and specialist palliative journals. This strategy is probably relevant for other health-related fields which use specialized terminology with restricted meanings. The word ‘sleep’ would be an example of a likely highly sensitive term relevant for the sleep medicine field. We note that, while the development and use of specialized subject search filters is widespread, such as those published as part of the Cochrane Collaborative Review Groups, the published formal evaluation (i.e. objective validation) of these subject search filters’ performances in medline is somewhat of a scarcity. Indeed, the majority of published validated filters focus on the identification of studies that use particular methods, such as those filters referenced in an impressive website dedicated to the identification of methodological search filter resources.7 While validated subject filters are reported in the formal literature, such as for sleep,8 paediatrics9 and the current palliative care example,1 these are far less frequent.
Second, one way of enhancing the sensitivity of a search for all palliative literature, would be to combine the Master Search (i.e. the most sensitive strategy for relevant literature in the general medical journal literature) with a strategy designed to find all the content published in a core group of specialist palliative journals. The syntax would vary depending on whether PubMed or OVID medline was used, but conceptually, such a strategy would be represented by the search: Master Search (using .af.) OR specialist palliative journals search. Such a combination, using different journal titles may be necessary because simply including .af. as a delimiter will not retrieve citations that do not use the given textwords; yet we speculate that most of what is published in the specialist journal literature is likely to be relevant.
Implementation
We have applied the findings of this research in creating resources to support palliative care clinicians and educators in accessing literature and evidence. Thereby, we have not only translated this research into practice, but are also supporting the process of translating other palliative research into practice. Subject-based search strategies using PubMed had earlier been developed and hosted on the CareSearch website (http://www.caresearch.com.au).6 These are presented as hyperlinks, so users can select a topic, which then runs a real-time search of PubMed. Topics include, for example, dyspnoea, vomiting and anorexia. In order to address the likely differing needs of searchers, these searches embed different search limits; for example, restricting results to randomized controlled trials or to free full-text articles. These searches are simple and not validated, however, offer an immediate entry point into PubMed in relation to topics commonly of interest in palliative care.
Subsequent to our research, these subject-based searches were modified to include the palliative care filter. In this way, we have implemented the best evidence that was currently available in relation to searching for these topics. We also provided the PubMed version of the filter online. In light of the results of bibliometric analyses presented here demonstrating that use of the .af. delimiter outperforms .tw, all online searches using PubMed have now been modified to use the equivalent PubMed [all fields] delimiter for the selected textwords. It is noted that, despite these efforts, the identification of further relevant MeSH terms and textwords to improve the underlying Master Search remains an outstanding research direction.
In conclusion, we argue that it is as important in this field as it is in clinical research, that evidence does not simply accumulate in journal articles. Neither should it be randomly or inappropriately applied. Issues of generalizability are therefore critical to evidence-based library and information practice. Evidence must be made accessible, which we have facilitated through development of a range of different searches for users. However, the process for doing this should be evidence based in its own right, which is reflected in our incorporation of the validated palliative care filter into those searches and subsequent modifications in the light of the current paper.
Author contributions
RMS and JT conceptualized and completed this research. RMS drafted the initial manuscript, which was critically reviewed and approved by both authors. JT evaluated journal articles for their relevance to palliative care.
Acknowledgements
We thank two independent reviewers, C. Sanderson and D. Rawings, who evaluated journal articles for their relevance to palliative care.
Key Messages
Implications for Policy
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Research evidence needs to be implemented to contribute to evidence-based practice.
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Generalizability is an important concept for all health research, including the field of library and information practice.
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Researchers should attempt to identify possible study decisions that could affect optimal implementation of the research.
Implications for Practice
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When searching for palliative care literature, the ‘af’ delimiter in the OVID medline search filter will increase sensitivity.
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Maximizing retrieval of articles within this subject specialty requires the naming of specific relevant journal titles in the search strategy.
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A tested PubMed version of the search filter enables use of this filter in a widely available bibliographic database.