Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase
S. Danielsen
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Search for more papers by this authorCorresponding Author
M. Kilstrup
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
*For correspondence. Tel. (33) 116062; Fax (33) 145058.Search for more papers by this authorK. Barilla
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Department of Chemistry, University of Regina, Regina, Saskatchewan, Canada S4S 0A2.
Search for more papers by this authorB. Jochimsen
Department of Molecular Biology, University of Aarhus, DK-8000 Arhus C., Denmark.
Search for more papers by this authorJ. Neuhard
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Search for more papers by this authorS. Danielsen
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Search for more papers by this authorCorresponding Author
M. Kilstrup
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
*For correspondence. Tel. (33) 116062; Fax (33) 145058.Search for more papers by this authorK. Barilla
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Department of Chemistry, University of Regina, Regina, Saskatchewan, Canada S4S 0A2.
Search for more papers by this authorB. Jochimsen
Department of Molecular Biology, University of Aarhus, DK-8000 Arhus C., Denmark.
Search for more papers by this authorJ. Neuhard
Institute of Biological Chemistry B, University of Copenhagen, Solvgade 83. DK-1307 Copenhagen K, Denmark.
Search for more papers by this authorSummary
The nucleotide sequence of a 3.1 kb segment carrying the cytosjne deaminase gene (codA) from Esctierichia coli was determined. The sequence revealed the presence of two open reading frames, the first (codB) specifying a highly hydrophobic polypeptide and the second specifying cytosine deaminase. A two-codon overlap between the two reading frames indicates that they constitute an operon. Transcription of the operon was found to be regulated by exogenous purines. Polypeptides specified by each of the two reading frames were expressed in minicells, and the codB gene product was found to be highly enriched in the membrane fraction. Uptake experiments showed that the CodB protein is required for cytosine transport into the cell and that the intracellular accumulation of cytosine correlated with the codB gene dose. A topological model for the cytosine permease in the cytoplasmic membrane is proposed.
References
- Andersen, L., Kilstrup, M., and Neuhard, J. (1989) Pyrimidine, purine and nitrogen control of cytosine deaminase synthesis in Escherichia coli K12, Involvement of the gtnLG and purR genes in the regulation of codA expression. Arch Microbiol 152: 115–118.
- Beck, C.F., Ingraham, J.L., and Neuhard, J. (1972a) Location on the chromosome of Salmonella typhimurium of genes governing pyrimidine metabolism. II Uridine kinase, cytosine deaminase and thymidine kinase. Mol Gen Genet 115: 208–215.
- Beck, C.F., Ingraham, J.L., Neuhard, J., and Thomassen, E. (1972b) Metabolism of pyrimidines and pyrimidine nucleosides by Salmonella typhimurium. J Bacteriol 110: 219–228.
- Buvinger, W.E., Lampel, K.A., Bojanowski, R.J., and Riley, M. (1984) Location and analysis of nucleotide sequences at one end of a putative lac transposon in the Escherichia coli chromosome. J Bacteriol 159: 618–623.
- Clark, D.J., and Maaloe, O. (1967) DNA replication and the division cycle in Escherichia coli. J Mol Biol 23: 99–112.
- Dandanell, G., and Hammer, K. (1991) deoP 1 pro Moler and operator mutants in Escherichia coli: isolation and characterization. Mol Microbiol 5: 2371–2376.
- De Haan, P.G., Felix, H.S., and Peters, R. (1972) Mapping of the gene for cytosine deaminase on the Escherichia coli chromosome, Antonie van Leeuwenhoek 38: 257–263.
- Donachie, W.D., and Robinson, A. (1987) Cell division: parameter values and the process. In Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology. Vol. 2. F.C. Neidhardt, J.L. Ingraham, K.B. Low, B. Magasanik, M. Schaechter, and H.E. Umbarger (eds). Washington , D.C ; American Society for Microbiology, pp. 1578–1593.
- Eisenberg, D., Schwartz, E., Komaromy, M., and Wall, R. (1984) Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J Mol Biol 179: 125–142.
- Esders, T.W., and Lynn, S.Y. (1985) Purification and properties of creatinine iminohydrolase from Flavobacterium filamentosum. J Biol Chem 260: 3915–3922.
- He, B., Shiau, A., Choi, K.Y., Zalkin, H., and Smith, J.M. (1990) Genes of the Escherichia coli pur regulon are negatively controlled by a repressor-operator interaction. J Bacteriol 172: 4555–4562.
- Hoeprich, P.D., Ingraham, J.L., Kleker, E., and Winship, M.J. (1974) Development of resistance to 5-fluorocytosine in Candida parapsilosis during therapy. J Inf Dis 130: 112–118.
- Hove-Jensen, B. (1985) Cloning and characterization of the prs gene encoding phosphoribosylpyrophosphate synthetase of Escherichia coli Mol Gen Genet 201: 269–276.
- Ipata, P.L., Marmocchi, F., Magni, G., Feliciolo, R., and Polidoro, G. (1971) Baker's yeast cytosine deaminase. Some enzymic properties and allosteric inhibition by nucleosides and nucleotides. Biochemistry 10: 4270–4276.
- Jensen, K.F., Larsen, J.N., Schack, L., and Siverisen, A. (1984) Studies on the structure and expression of Escherichia coli pyrC, pyrD and pyrF using the cloned genes. Eur J Biochem 140: 343–352.
- Jund, R., and Lacroute, F. (1970) Genetic and physiological aspects of resistance of 5-fluoropyrimidines in Saccharomyces cerevisiae. J Bacteriol 102: 607–615.
- Katsuragi, T., Sakai, T., Tonomura, K. (1986a) Affinity chromatography of cytosine deaminase from Escherichia coli with immobilized pyrimidine compounds. Agric Biol Chem 50: 1713–1719.
-
Katsuragi, T.,
Sakai, T.,
Matsumolo, K., and
Tonomura, K. (1989b) Cytosine deaminase from Escherichia coli— production, purification, and some characteristics.
Agric Biol Chem
50: 1721–1730.
10.1271/bbb1961.50.1721 Google Scholar
- Kilstrup, M., Meng, L.M., Neuhard, J., and Nygaard, P. (1989) Genetic evidence for a repressor of synthesis of cytosine deaminase and purine biosynthesis enzymes in Escherichia Coli. J Bacteriol 171: 2124–2127.
- Koechlin, B.A., Rubio, F., Palmer, S., Gabriel T., and Duschinsky, R. (1966) The metabolism of 5-fluorocytosine–214C and of cytosine-14C in the rat and the disposition of 5-fluorocyto-sine-214C in man. Biochem Pharmacol 15: 435–446.
- Kohara, Y., Akiyama, K., and Isono, K. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for analysis and sorting a large genomic library. Cell 50: 495–508.
- Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685.
- Lampel, K.A., and Riley, M. (1982) Discontinuity of homology of Escherichia coli and Salmonella typhimurium DNA in the lac region. Mol Gen Genet 186: 82–86.
- Lind, R.M., Sukhodolets, V.V., and Smirnov, Y.U. (1973) Mutations affecting deamiNatlon and transport of cytosine in Escheriohia coli. Genetika 9: 116–121.
- Maloney, P.C. (1990) A consensus structure for membrane transport. Research in Microbiology 141: 374–383.
- McGovern, K., Ehrmann, M., and Beckwith, J. (1991) Decoding signals for membrane protein assembly using alkaline phosphatase fusions. EMBO J 10: 2773–2782.
- McKenney, K., Shimatake, H., Court, D., Schmeissner, U., Brady, C., and Rosenberg, M. (1981) A system to study proMoler and terminator signals recognized by Escherichia coli RNA polymerase. In Gene Amplification and Analysis. Vol. 2. J.C. Chirigjian, and T.S. Papas (eds). Amsterdam : Elsevier/North-Holland, pp. 383–415.
- Mead, D.A., Szczesna-Skorupa, E., and Kemper, B. (1986) Single-stranded DNA ‘blue’ T7 proMoler plasmids: a versatile tandem promoter system for cloning and protein engineering. Prot Eng 1: 67–74.
- Meng, L.M., Kilstrup, M., and Nygaard, P. (1990) Autoregulation of PurR repressor synthesis and involvement of puR in the regulation of purB, purC, purl, purMN and guaBA expression in Escherichia coli. Eur J Biochem 187: 373–379.
- Miller, J. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory , New York : Cold Spring Harbor Laboratory Press.
- Mullen, C.A., Kilstrup, M., and Blaese, R.M. (1992) Transfer of the bacterial gene for cytosine deaminase to mammalian cells confers lethal sensitivity to 5-fluorocytosine: a new negative selection system. Proc Natl Acad Sci USA 89: 33–37.
- Neuhard, J., and Ingraham, J.L. (1968) Mutants of Salmonella typhimurium requiring cytidine for growth. J Bacteriol 95: 2431–2433.
- Nishiyama, T., Kawamura, Y., Kawamolo, K., Matsumura, H., Yamamoto, N., Ito, T., Ohyama, A., Katsuragi, T., and Sakai, T. (1985) Antineoplastic effects in rats of 5-fluorocytosine in combiNatlon with cytosine deaminase capsules. Cancer Res 45: 1753–1761.
- Sakai, T., Yu, T., Tabe, H., and Omata, S. (1975a) Purification of cytosine deaminase from Serratia marcescens. Agric Biol Chem 39: 1623–1629.
- Sakai, T., Yu, T., Taniguchi, K., and Omata, S. (1975b) Purification of cytosine deaminase from Pseudomonas aureofaciens. Agric Biol Chem 39: 2015–2020.
- Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor , New York : Cold Spring Harbor Laboratory Press.
- Sanger, F., Nicklen, S., and Coulson, A.R. (1977) DNA sequencing with chain-termiNatlng inhibitors. Proc Natl Acad Sci USA 74: 5463–5467.
- Schlösser, A., Kluttig, S., Hamann, A., and Bakker, E.P. (1991) Subcloning, nucleotide sequence, and expression of trkG. a gene that encodes an integral membrane protein involved in potassium uptake via the Trk system in Escherichia coli. J Bacteriol 173: 3170–3176.
- Stern, M.J., Ames, G.F.-L., Smith, N.H., Robinson, E.C, and Higgins, C.F. (1984) Repetetive extragenic palindromic sequences: a major component of the bacterial genome. Cell 37: 1015–1026.
- Sung, Y., and Fuchs, J.A. (1988) Characterization of the cyn operon in Escherichia coli K12. J Biol Chem 263: 14769–14775.
- von Heijne, G. (1986) The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology. EMBO J 5: 3021–3027.
- Weber, E., Rodriguez, C., Chevallier, M.R., and Jund, R. (1990) The purine-cytosine permease gene of Saccharomyces cerevisiae: primary structure and deduced protein sequence of the FCY2 gene product. Mol Microbiol 4: 585–596.
- West, T.P., Shanley, M.S-, and O'Donovan, G.A. (1982) Purification and some properties of cytosine deaminase from Salmonella typhimurium. Biochim Biophys Aota 719: 251–258.