Whole-Exome Sequencing Reveals GPIHBP1 Mutations in Infantile Colitis With Severe Hypertriglyceridemia
Claudia Gonzaga-Jauregui
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorSabina Mir
Department of Pediatrics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorSamantha Penney
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorShalini Jhangiani
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCraig Midgen
Section of Pediatric Pathology, Department of Pathology, Baylor College of Medicine, Houston, TX
Search for more papers by this authorMilton Finegold
Section of Pediatric Pathology, Department of Pathology, Baylor College of Medicine, Houston, TX
Search for more papers by this authorDonna M. Muzny
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorMin Wang
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCarlos A. Bacino
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorRichard A. Gibbs
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorJames R. Lupski
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorRichard Kellermayer
Department of Pediatrics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCorresponding Author
Neil A. Hanchard
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Address correspondence and reprint requests to Neil A. Hanchard, MD, PhD, Baylor College of Medicine, Houston, TX (e-mail: [email protected]).Search for more papers by this authorClaudia Gonzaga-Jauregui
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorSabina Mir
Department of Pediatrics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorSamantha Penney
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorShalini Jhangiani
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCraig Midgen
Section of Pediatric Pathology, Department of Pathology, Baylor College of Medicine, Houston, TX
Search for more papers by this authorMilton Finegold
Section of Pediatric Pathology, Department of Pathology, Baylor College of Medicine, Houston, TX
Search for more papers by this authorDonna M. Muzny
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorMin Wang
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCarlos A. Bacino
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorRichard A. Gibbs
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorJames R. Lupski
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorRichard Kellermayer
Department of Pediatrics, Baylor College of Medicine, Houston, TX
Search for more papers by this authorCorresponding Author
Neil A. Hanchard
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
Address correspondence and reprint requests to Neil A. Hanchard, MD, PhD, Baylor College of Medicine, Houston, TX (e-mail: [email protected]).Search for more papers by this authorDrs Gonzaga-Jauregui and Mir contributed equally to the work.
Supplemental digital content is available for this article. Direct URL citations appear in the printed text, and links to the digital files are provided in the HTML text of this article on the journal's Web site (www.jpgn.org).
This work was supported by grant U54HG006542 from the National Human Genome Research Institute (NHGRI) to the Baylor-Hopkins Center for Mendelian Genomics.
J.R.L. is supported by grants R01NS058529 from the National Institute of Neurological Disorders and Stroke and U54HG006542 from the National Human Genome Research Institute and is a consultant for Athena Diagnostics, 23andMe, and Ion Torrent Systems, Inc and holds multiple US and European patents for DNA diagnostics. R.A.G. is supported by the National Human Genome Research Institute grant 2-U54HG003273-09 and the National Cancer Institute, was an owner of SeqWright, and is an advisor to GE Healthcare/Clarient and the Allen Institute for Brain Science. N.A.H. is supported by a Clinical Scientist Development Award from the Doris Duke Charitable Foundation. The other authors report no conflicts of interest.
ABSTRACT
Severe congenital hypertriglyceridemia (HTG) is a rare disorder caused by mutations in genes affecting lipoprotein lipase (LPL) activity. Here we report a 5-week-old Hispanic girl with severe HTG (12,031 mg/dL, normal limit 150 mg/dL) who presented with the unusual combination of lower gastrointestinal bleeding and milky plasma. Initial colonoscopy was consistent with colitis, which resolved with reduction of triglycerides. After negative sequencing of the LPL gene, whole-exome sequencing revealed novel compound heterozygous mutations in GPIHBP1. Our study broadens the phenotype of GPIHBP1-associated HTG, reinforces the effectiveness of whole-exome sequencing in Mendelian diagnoses, and implicates triglycerides in gastrointestinal mucosal injury.
REFERENCES
- 1Feoli-Fonseca JC, Levy E, Godard M, et al. Familial lipoprotein lipase deficiency in infancy: clinical, biochemical, and molecular study. J Pediatr 1998; 133: 417–423.
- 2Sprecher DL, Taam L, Gregg RE, et al. Identification of an apoC-II variant (apoC-IIBethesda) in a kindred with apoC-II deficiency and type I hyperlipoproteinemia. J Lipid Res 1988; 29: 273–278.
- 3Priore Oliva C, Pisciotta L, Li Volti G, et al. Inherited apolipoprotein A-V deficiency in severe hypertriglyceridemia. Arterioscler Thromb Vasc Biol 2005; 25: 411–417.
- 4Peterfy M, Ben-Zeev O, Mao HZ, et al. Mutations in LMF1 cause combined lipase deficiency and severe hypertriglyceridemia. Nat Genet 2007; 39: 1483–1487.
- 5Beigneux AP, Franssen R, Bensadoun A, et al. Chylomicronemia with a mutant GPIHBP1 (Q115P) that cannot bind lipoprotein lipase. Arterioscler Thromb Vasc Biol 2009; 29: 956–962.
- 6Teer JK, Mullikin JC. Exome sequencing: the sweet spot before whole genomes. Hum Mol Genet 2010; 19 (R2): R145–R151.
- 7Bamshad MJ, Shendure JA, Valle D, et al. The Centers for Mendelian Genomics: a new large-scale initiative to identify the genes underlying rare Mendelian conditions. Am J Med Genet A 2012; 158A: 1523–1525.
- 8Ng SB, Bigham AW, Buckingham KJ, et al. Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome. Nat Genet 2010; 42: 790–793.
- 9Lupski JR, Reid JG, Gonzaga-Jauregui C, et al. Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. N Engl J Med 2010; 362: 1181–1191.
- 10Goh V, Helbling D, Biank V, et al. Next-generation sequencing facilitates the diagnosis in a child with twinkle mutations causing cholestatic liver failure. J Pediatr Gastroenterol Nutr 2011; 54: 291–294.
- 11Murdock DR, Clark GD, Bainbridge MN, et al. Whole-exome sequencing identifies compound heterozygous mutations in WDR62 in siblings with recurrent polymicrogyria. Am J Med Genet A 2011; 155: 2071–2077.
- 12Worthey EA, Mayer AN, Syverson GD, et al. Making a definitive diagnosis: successful clinical application of whole exome sequencing in a child with intractable inflammatory bowel disease. Genet Med 2011; 13: 255–262.
- 13Bainbridge MN, Wiszniewski W, Murdock DR, et al. Whole-genome sequencing for optimized patient management. Sci Transl Med 2011; 3: 87re3.
- 14Gonzaga-Jauregui C, Lupski JR, Gibbs RA. Human genome sequencing in health and disease. Annu Rev Med 2012; 63: 35–61.
- 15Hanchard NA, Murdock DR, Magoulas PL, et al. Exploring the utility of whole-exome sequencing as a diagnostic tool in a child with atypical episodic muscle weakness. Clin Genet 2013; 83: 457–461.
- 16Yang Y, Muzny DM, Reid JG, et al. Clinical whole-exome sequencing for the diagnosis of mendelian disorders. N Engl J Med 2013; 369: 1502–1511.
- 17Lupski JR, Gonzaga-Jauregui C, Yang Y, et al. Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy. Genome Med 2013; 5: 57.
- 18Shen Y, Wan Z, Coarfa C, et al. A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res 2010; 20: 273–280.
- 19Li H, Handsaker B, Wysoker A, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25: 2078–2079.
- 20Gonzaga-Jauregui C, Lotze T, Jamal L, et al. Mutations in VRK1 associated with complex motor and sensory axonal neuropathy plus microcephaly. JAMA Neurol 2013; 70: 1491–1498.
- 21Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010; 38: e164.
- 22Adzhubei IA, Schmidt S, Peshkin L, et al. A method and server for predicting damaging missense mutations. Nat Methods 2010; 7: 248–249.
- 23Adzhubei I, Jordan DM, Sunyaev SR. Predicting functional effect of human missense mutations using PolyPhen-2. Curr Protoc Hum Genet 2013; Chapter 7(Unit7 20).
- 24Choi Y, Sims GE, Murphy S, et al. Predicting the functional effect of amino acid substitutions and indels. PLoS One 2012; 7: e46688.
- 25Beigneux AP, Davies BS, Bensadoun A, et al. GPIHBP1, a GPI-anchored protein required for the lipolytic processing of triglyceride-rich lipoproteins. J Lipid Res 2009; 50 (suppl): S57–S62.
- 26Beigneux AP, Davies BS, Gin P, et al. Glycosylphosphatidylinositol-anchored high-density lipoprotein-binding protein 1 plays a critical role in the lipolytic processing of chylomicrons. Cell Metab 2007; 5: 279–291.
- 27Weinstein MM, Yin L, Beigneux AP, et al. Abnormal patterns of lipoprotein lipase release into the plasma in GPIHBP1-deficient mice. J Biol Chem 2008; 283: 34511–34518.
- 28Coca-Prieto I, Kroupa O, Gonzalez-Santos P, et al. Childhood-onset chylomicronaemia with reduced plasma lipoprotein lipase activity and mass: identification of a novel GPIHBP1 mutation. J Intern Med 2011; 270: 224–228.
- 29Franssen R, Young SG, Peelman F, et al. Chylomicronemia with low postheparin lipoprotein lipase levels in the setting of GPIHBP1 defects. Circ Cardiovasc Genet 2010; 3: 169–178.
- 30Olivecrona G, Ehrenborg E, Semb H, et al. Mutation of conserved cysteines in the Ly6 domain of GPIHBP1 in familial chylomicronemia. J Lipid Res 2010; 51: 1535–1545.
- 31Rios JJ, Shastry S, Jasso J, et al. Deletion of GPIHBP1 causing severe chylomicronemia. J Inherit Metab Dis 2012; 35: 531–540.
- 32Surendran RP, Visser ME, Heemelaar S, et al. Mutations in LPL, APOC2, APOA5, GPIHBP1 and LMF1 in patients with severe hypertriglyceridaemia. J Intern Med 2012; 272: 185–196.
- 33Wang J, Hegele RA. Homozygous missense mutation (G56R) in glycosylphosphatidylinositol-anchored high-density lipoprotein-binding protein 1 (GPI-HBP1) in two siblings with fasting chylomicronemia (MIM 144650). Lipids Health Dis 2007; 6: 23.
- 34Alipour A, van Oostrom AJ, Izraeljan A, et al. Leukocyte activation by triglyceride-rich lipoproteins. Arterioscler Thromb Vasc Biol 2008; 28: 792–797.
- 35Inouye M, Silander K, Hamalainen E, et al. An immune response network associated with blood lipid levels. PLoS Genet 2010; 6: e1001113.
- 36Nordstoga K, Sorby R, Olivecrona G, et al. Pancreatitis in hyperlipemic mink (Mustela vison). Vet Pathol 2012; 49: 557–561.
- 37Adeyo O, Goulbourne CN, Bensadoun A, et al. Glycosylphosphatidylinositol-anchored high-density lipoprotein-binding protein 1 and the intravascular processing of triglyceride-rich lipoproteins. J Intern Med 2012; 272: 528–540.
- 38Davies BS, Beigneux AP, Barnes RH 2nd, et al. GPIHBP1 is responsible for the entry of lipoprotein lipase into capillaries. Cell Metab 2010; 12: 42–52.
- 39Young SG, Davies BS, Voss CV, et al. GPIHBP1, an endothelial cell transporter for lipoprotein lipase. J Lipid Res 2011; 52: 1869–1884.
- 40Wierzbicki AS, Viljoen A. Alipogene tiparvovec: gene therapy for lipoprotein lipase deficiency. Expert Opin Biol Ther 2013; 13: 7–10.
- 41Gaudet D, Methot J, Kastelein J. Gene therapy for lipoprotein lipase deficiency. Curr Opin Lipidol 2012; 23: 310–320.
- 42Shashi V, McConkie-Rosell A, Rosell B, et al. The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders. Genet Med 2014; 16: 172–182.
- 43Biesecker L. Editorial comment on “Whole Exome Sequencing Identifies Compound Heterozygous Mutations in WDR62 in Siblings With Recurrent Polymicrogyria”. Am J Med Genet Part A 2011; 155: 2069–2070.