Volume 30, Issue 4 pp. 496-510
Special Article
Free Access

Planning the Human Variome Project: The Spain report

Jim Kaput

Corresponding Author

Jim Kaput

Division of Personalised Nutrition and Medicine, FDA/National Center for Toxicological Research, Jefferson, Arkansas

The first four authors contributed equally to the preparation of this manuscript.

Division of Personalized Nutrition and Medicine, FDA/National Center for Toxicological Research, 3900 NCTR Road, Jefferson, AR 72079Search for more papers by this author
Richard G.H. Cotton

Richard G.H. Cotton

Genomic Disorders Research Centre, Melbourne, Australia

Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville, Australia

The first four authors contributed equally to the preparation of this manuscript.

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Lauren Hardman

Lauren Hardman

Genomic Disorders Research Centre, Melbourne, Australia

The first four authors contributed equally to the preparation of this manuscript.

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Michael Watson

Michael Watson

American College of Medical Genetics, Bethesda, Maryland

The first four authors contributed equally to the preparation of this manuscript.

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Aida I. Al Aqeel

Aida I. Al Aqeel

Department of Paediatrics, Riyadh Military Hospital, Kingdom of Saudi Arabia

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Jumana Y. Al-Aama

Jumana Y. Al-Aama

Princess Al Jawhara Center for Hereditary Disorders, King Abdulaziz University, Saudi Arabia

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Fahd Al-Mulla

Fahd Al-Mulla

Molecular Pathology Unit, Kuwait University, Kuwait

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Santos Alonso

Santos Alonso

Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country, Spain

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Stefan Aretz

Stefan Aretz

Institute of Human Genetics, University of Bonn, Germany

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Arleen D. Auerbach

Arleen D. Auerbach

Laboratory of Human Genetics and Hematology, The Rockefeller University, New York, New York

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Bharati Bapat

Bharati Bapat

Lab Medicine & Pathobiology, Mount Sinai Hospital, University of Toronto, Canada

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Inge T. Bernstein

Inge T. Bernstein

Surgical gastroenterology, Hvidovre Hospital, Copenhagen, Denmark

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Jong Bhak

Jong Bhak

Korean Bioinformation Center, KRIBB, ChungNam, South Korea

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Stacey L. Bleoo

Stacey L. Bleoo

Medical Genetics, University of Alberta, Edmonton, Canada

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Helmut Blöcker

Helmut Blöcker

Genome Analysis, HZI—Helmholtz Centre for Infection Research, Braunschweig, Germany

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Steven E. Brenner

Steven E. Brenner

University of California, Berkeley, California

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John Burn

John Burn

Institute of Human Genetics, International Centre for Life, United Kingdom

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Mariona Bustamante

Mariona Bustamante

Centre for Genomic Regulation and Center for Network Biomedical Research on Epidemiology and Public Health, Barcelona, Spain

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Rita Calzone

Rita Calzone

Genetic Service ASL, Napoli, Italy

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Anne Cambon-Thomsen

Anne Cambon-Thomsen

Epidemiology and Public Health Analyses, Inserm, Toulouse, France

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Michele Cargill

Michele Cargill

Human Genetics, Navigenics, Redwood Shores, California

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Paola Carrera

Paola Carrera

Unit of Genomics for Diagnostics of Human Disease and Laboraf, San Raffaele Scientific Institute, Milano, Italy

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Lawrence Cavedon

Lawrence Cavedon

Victorian Research Laboratory, NICTA (National ICT Australia), Parkville, Australia

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Yoon Shin Cho

Yoon Shin Cho

Division of Structural and Functional Genomics, Korean National Institute of Health, Seoul, South Korea

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Yeun-Jun Chung

Yeun-Jun Chung

Department of Microbiology and Genomics, Catholic University of Korea, Seoul, South Korea

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Mireille Claustres

Mireille Claustres

Université Montpellier 1, Faculté de Médecine and CHU, Laboratoire de Genetique Moleculaire, Montpellier, France

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Garry Cutting

Garry Cutting

Johns Hopkins University School of Medicine, Institute of Genetic Medicine, Baltimore, Maryland

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Raymond Dalgleish

Raymond Dalgleish

Department of Genetics, University of Leicester, United Kingdom

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Johan T. den Dunnen

Johan T. den Dunnen

Human and Clinical Genetics, Leiden University Medical Center, The Netherlands

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Carlos Díaz

Carlos Díaz

European Projects Management and Coordination Office, Fundació IMIM, Barcelona, Spain

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Steven Dobrowolski

Steven Dobrowolski

Research & Development, Idaho Technology, Inc., Salt Lake City, Utah

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M. Rosário N. dos Santos

M. Rosário N. dos Santos

Centro de Genética Médica J., Magalhães, INSA, Portugall

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Rosemary Ekong

Rosemary Ekong

Department of Genetics, Evolution and Environment, University College London, United Kingdom

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Simon B. Flanagan

Simon B. Flanagan

Molecular Genetics, Pathology Queensland, Royal Brisbane and Women's Hospital, Herston, Australia

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Paul Flicek

Paul Flicek

EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

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Yoichi Furukawa

Yoichi Furukawa

Division of Clinical Genome Research, Institute of Medical Science, The University of Tokyo, Japan

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Maurizio Genuardi

Maurizio Genuardi

Clinical Pathophysiology, University of Florence, Italy

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Ho Ghang

Ho Ghang

Korean Bioinformation Center, KRIBB, ChungNam, South Korea

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Maria V. Golubenko

Maria V. Golubenko

Institute of Medical Genetics, Tomsk, Russia

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Marc S. Greenblatt

Marc S. Greenblatt

College of Medicine, University of Vermont, Burlington, Vermont

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Ada Hamosh

Ada Hamosh

OMIM and Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland

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John M. Hancock

John M. Hancock

Bioinformatics Group, MRC Harwell, United Kingdom

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Ross Hardison

Ross Hardison

The Pennsylvania State University, University Park, Pennsylvania

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Terence M. Harrison

Terence M. Harrison

Health Sciences Library and The Victorian Mental Health Library, Royal Melbourne Hospital, Parkville, Australia

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Robert Hoffmann

Robert Hoffmann

Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, Massachusetts

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Rania Horaitis

Rania Horaitis

Genomic Disorders Research Centre, Melbourne, Australia

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Heather J. Howard

Heather J. Howard

Genomic Disorders Research Centre, Melbourne, Australia

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Carol Isaacson Barash

Carol Isaacson Barash

Genetics, Ethics & Policy Consulting Inc., Boston, Massachusetts

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Neskuts Izagirre

Neskuts Izagirre

University of the Basque Country, Spain

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Jongsun Jung

Jongsun Jung

Division of Structural and Functional Genomics, Korean National Institute of Health, Seoul, South Korea

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Toshio Kojima

Toshio Kojima

Advanced Computational Sciences Department, RIKEN, Kanagawa, Japan

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Sandrine Laradi

Sandrine Laradi

Establissement Francais Du sang, Auvergne-Loire, France

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Yeon-Su Lee

Yeon-Su Lee

Functional Genomics Branch, National Cancer Center, Goyang, South Korea

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Jong-Young Lee

Jong-Young Lee

Division of Structural and Functional Genomics, Korean National Institute of Health, Seoul, South Korea

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Vera L. Gil-da-Silva-Lopes

Vera L. Gil-da-Silva-Lopes

Department of Medical Genetics, State University of Campinas, Brazil

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Finlay A. Macrae

Finlay A. Macrae

Department of Colorectal Medicine and Genetics, Royal Melbourne Hospital, Australia

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Donna Maglott

Donna Maglott

OMIM, NCBI, Baltimore, Maryland

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Makia J. Marafie

Makia J. Marafie

Clinical Genetics, Kuwait Medical Genetics Centre, Kuwait

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Steven G.E. Marsh

Steven G.E. Marsh

HLA Informatics Group, Anthony Nolan Research Institute and Department of Haematology, UCL Cancer Institute, London, United Kingdom

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Yoichi Matsubara

Yoichi Matsubara

Department of Medical Genetics, Tohoku University School of Medicine, Sendai, Japan

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Ludwine M. Messiaen

Ludwine M. Messiaen

Department of Genetics, University of Alabama, Birmingham, Alabama

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Gabriela Möslein

Gabriela Möslein

St. Josefs-Hospital Bochum-Linden, Germany

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Mihai G. Netea

Mihai G. Netea

Department of Medicine, Radboud University Nijmegen Medical Center, The Netherlands

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Melissa L. Norton

Melissa L. Norton

Genome Medicine, London, United Kingdom

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Peter J. Oefner

Peter J. Oefner

Institute of Functional Genomics, University of Regensburg, Germany

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William S. Oetting

William S. Oetting

Department of Medicine, Genetics, Institute of Human Genetics, University of Minnesota, Minneapolis, Minnesota

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James C. O'Leary

James C. O'Leary

Genetic Alliance, Washington, DC

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Ana Maria Oller de Ramirez

Ana Maria Oller de Ramirez

Pediatric Clinic Department, School of Medicine, National University of Córdoba, Argentina

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Mark H. Paalman

Mark H. Paalman

Human Mutation, Hoboken, New Jersey

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Jillian Parboosingh

Jillian Parboosingh

Medical Genetics, University of Calgary, Alberta, Canada

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George P. Patrinos

George P. Patrinos

MGC—Department of Cell Biology and Genetics, Faculty of Medicine and Health Sciences, Erasmus University Medical Center, Rotterdam, The Netherlands and University of Patras, Department of Pharmacy, Patras, Greece

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Giuditta Perozzi

Giuditta Perozzi

INRAN—National Research Institute on Food & Nutrition, Rome, Italy

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Ian R. Phillips

Ian R. Phillips

School of Biological and Chemical Sciences, Queen Mary, University of London, United Kingdom

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Sue Povey

Sue Povey

Molecular Genetics, Pathology Queensland, Royal Brisbane and Women's Hospital, Herston, Australia

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Suyash Prasad

Suyash Prasad

Genzyme Therapeutics Ltd, Oxford, United Kingdom

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Ming Qi

Ming Qi

ADINOVO Center for Genetic & Genomic Medicine, The First Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, P.R. China, and University of Rochester Medical Center, New York

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David J. Quin

David J. Quin

Funding Health Information Policy, Department of Human Services, Melbourne, Australia

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Rajkumar S. Ramesar

Rajkumar S. Ramesar

Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, South Africa

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C. Sue Richards

C. Sue Richards

OHSU DNA Diagnostic Lab, Oregon Health & Science University, Portland, Oregon

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Judith Savige

Judith Savige

Department of Medicine, The University of Melbourne, Epping, Australia

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Dagmar G. Scheible

Dagmar G. Scheible

Metabolic Department, Klinik fuer Kinder-und Jugendmedizin, Reutlingen, Germany

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Rodney J. Scott

Rodney J. Scott

Discipline of Medical Genetics, Faculty of Health, University of Newcastle, Australia

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Daniela Seminara

Daniela Seminara

Division of Cancer Control and Population Sciences, National Cancer Institute, NIH, Bethesda, Maryland

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Elizabeth A. Shephard

Elizabeth A. Shephard

Department of Structural and Molecular Biology, University College London, United Kingdom

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Rolf H. Sijmons

Rolf H. Sijmons

Department of Genetics, University Medical Center Groningen, Groningen, The Netherlands

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Timothy D. Smith

Timothy D. Smith

Genomic Disorders Research Centre, Melbourne, Australia

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María-Jesús Sobrido

María-Jesús Sobrido

Fundacion Publica Galega de Medicina Xenomica, Santiago de Compostela, Spain, and Center for Network Biomedical Research on Rare Diseases, Institute of Health Carlos III, Madrid, Spain

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Toshihiro Tanaka

Toshihiro Tanaka

Centre for Genome Medicine, RIKEN, Tokyo, Japan

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Sean V. Tavtigian

Sean V. Tavtigian

International Agency for Research on Cancer (IARC), Lyon, France

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Graham R. Taylor

Graham R. Taylor

Regional DNA Laboratory, Cancer Research, UK Mutation Detection Facility, Leeds, United Kingdom

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Jon Teague

Jon Teague

Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom

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Thoralf Töpel

Thoralf Töpel

Technical facility, Bioinformatics Department, Bielefeld University, Germany

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Mollie Ullman-Cullere

Mollie Ullman-Cullere

Harvard Medical School, Partners HealthCare Center for Genetics and Genomics, Cambridge, Massachusetts

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Joji Utsunomiya

Joji Utsunomiya

Advanced Computational Sciences Department, RIKEN, Kanagawa, Japan

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Henk J. van Kranen

Henk J. van Kranen

Nutrition & Health, National Inst. Public Health & Environment, Utrecht, The Netherlands

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Mauno Vihinen

Mauno Vihinen

Institute of Medical Technology, Bioinformatics Group, University of Tampere and Tampere University Hospital, Finland

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Elizabeth Webb

Elizabeth Webb

Genomic Disorders Research Centre, Melbourne, Australia

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Thomas K. Weber

Thomas K. Weber

Departments of Surgery and Molecular Genetics, Albert Einstein College of Medicine, New York, New York

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Meredith Yeager

Meredith Yeager

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, Maryland

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Young I. Yeom

Young I. Yeom

Medical Genomics Research Center, Korea Research Institute of Bioscience & Biotechnology, Daejeon, South Korea

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Seon-Hee Yim

Seon-Hee Yim

Catholic University of Korea, Seoul, South Korea

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Hyang-Sook Yoo

Hyang-Sook Yoo

Fred Hutchinson Cancer Research Center—KRIBB, collaboration center at KRIBB, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea

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on behalf of contributors to the Human Variome Project Planning Meeting

on behalf of contributors to the Human Variome Project Planning Meeting

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First published: 20 March 2009
Citations: 44

Affiliations for all authors are listed in the Appendix. Members of working groups, their affiliations, institutions, and email addresses can be found at http://www.humanvariomeproject.org.

Abstract

The remarkable progress in characterizing the human genome sequence, exemplified by the Human Genome Project and the HapMap Consortium, has led to the perception that knowledge and the tools (e.g., microarrays) are sufficient for many if not most biomedical research efforts. A large amount of data from diverse studies proves this perception inaccurate at best, and at worst, an impediment for further efforts to characterize the variation in the human genome. Because variation in genotype and environment are the fundamental basis to understand phenotypic variability and heritability at the population level, identifying the range of human genetic variation is crucial to the development of personalized nutrition and medicine. The Human Variome Project (HVP; http://www.humanvariomeproject.org/) was proposed initially to systematically collect mutations that cause human disease and create a cyber infrastructure to link locus specific databases (LSDB). We report here the discussions and recommendations from the 2008 HVP planning meeting held in San Feliu de Guixols, Spain, in May 2008. Hum Mutat 30, 496–510, 2009. © 2009 Wiley-Liss, Inc.

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