Epistatic interactions with a common hypomorphic RET allele in syndromic Hirschsprung disease†
L. de Pontual
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorA. Pelet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorM. Clement-Ziza
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorD. Trochet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorS.E. Antonarakis
Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, Geneva, Switzerland
Search for more papers by this authorT. Attie-Bitach
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorP.L. Beales
Molecular Medicine Unit, Institute of Child Health, University College London, London, United Kingdom
Search for more papers by this authorJ.-L. Blouin
Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, Geneva, Switzerland
Search for more papers by this authorF. Dastot-Le Moal
INSERM U-654, Bases Moléculaires et Cellulaires des Maladies Génétiques, Créteil, France
Search for more papers by this authorH. Dollfus
Service de Génétique Médicale, Hôpitaux Universitaires de Strasbourg, Strasbourg, France
Search for more papers by this authorM. Goossens
INSERM U-654, Bases Moléculaires et Cellulaires des Maladies Génétiques, Créteil, France
Search for more papers by this authorN. Katsanis
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland
Search for more papers by this authorR. Touraine
Service de Génétique, Hôpital Nord, CHU Saint-Etienne, Saint-Etienne, France
Search for more papers by this authorJ. Feingold
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorA. Munnich
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorS. Lyonnet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorCorresponding Author
J. Amiel
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Département de Génétique, Hôpital Necker-Enfants Malades, 149, rue de Sèvres, 75743 Paris Cedex 15, FranceSearch for more papers by this authorL. de Pontual
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorA. Pelet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorM. Clement-Ziza
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorD. Trochet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorS.E. Antonarakis
Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, Geneva, Switzerland
Search for more papers by this authorT. Attie-Bitach
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorP.L. Beales
Molecular Medicine Unit, Institute of Child Health, University College London, London, United Kingdom
Search for more papers by this authorJ.-L. Blouin
Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, Geneva, Switzerland
Search for more papers by this authorF. Dastot-Le Moal
INSERM U-654, Bases Moléculaires et Cellulaires des Maladies Génétiques, Créteil, France
Search for more papers by this authorH. Dollfus
Service de Génétique Médicale, Hôpitaux Universitaires de Strasbourg, Strasbourg, France
Search for more papers by this authorM. Goossens
INSERM U-654, Bases Moléculaires et Cellulaires des Maladies Génétiques, Créteil, France
Search for more papers by this authorN. Katsanis
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland
Search for more papers by this authorR. Touraine
Service de Génétique, Hôpital Nord, CHU Saint-Etienne, Saint-Etienne, France
Search for more papers by this authorJ. Feingold
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorA. Munnich
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorS. Lyonnet
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Search for more papers by this authorCorresponding Author
J. Amiel
Université Paris-René Descartes, Faculté de Médecine, INSERM U-781, AP-HP, Hôpital Necker-Enfant Malades, Paris, France
Département de Génétique, Hôpital Necker-Enfants Malades, 149, rue de Sèvres, 75743 Paris Cedex 15, FranceSearch for more papers by this authorCommunicated by Daniel Schorderet
Abstract
Hirschsprung disease (HSCR) stands as a model for genetic dissection of complex diseases. In this model, a major gene, RET, is involved in most if not all cases of isolated (i.e., nonsyndromic) HSCR, in conjunction with other autosomal susceptibility loci under a multiplicative model. HSCR susceptibility alleles can harbor either heterozygous coding sequence mutations or, more frequently, a polymorphism within intron 1, leading to a hypomorphic RET allele. On the other hand, about 30% of HSCR are syndromic. Hitherto, the disease causing gene has been identified for eight Mendelian syndromes with HSCR: congenital central hypoventilation (CCHS), Mowat-Wilson (MWS), Bardet-Biedl (BBS), Shah-Waardenburg (WS4), cartilage-hair-hypoplasia (CHH), Smith-Lemli-Opitz (SLO), Goldberg-Sprintzsen (GSS), and hydrocephalus due to congenital stenosis of the aqueduct of sylvius (HSAS). According to the HSCR syndrome, the penetrance of HSCR trait varies from 5 to 70%. Trisomy 21 (T21) also predisposes to HSCR. We were able to collect a series of 393 patients affected by CCHS (n = 173), WS4 (n = 24), BBS (n = 51), MWS (n = 71), T21 (n = 46), and mental retardation (MR) with HSCR (n = 28). For each syndrome, we studied the RET locus in two subgroups of patients; i.e., with or without HSCR. We genotyped the RET locus in 393 patients among whom 195 had HSCR, and compared the distribution of alleles and genotypes within the two groups for each syndrome. RET acts as a modifier gene for the HSCR phenotype in patients with CCHS, BBS, and Down syndrome, but not in patients with MWS and WS4. The frequent, low penetrant, predisposing allele of the RET gene can be regarded as a risk factor for the HSCR phenotype in CCHS, BBS, and Down syndrome, while its role is not significant in MWS and WS4. These data highlight the pivotal role of the RET gene in both isolated and syndromic HSCR. Hum Mutat 28(8), 790–796, 2007. © 2007 Wiley-Liss, Inc.
REFERENCES
- Amiel J, Salomon R, Attie T, Pelet A, Trang H, Mokhtari M, Gaultier C, Munnich A, Lyonnet S. 1998. Mutations of the RET-GDNF signaling pathway in Ondine's curse. Am J Hum Genet 62: 715–717.
- Amiel J, Lyonnet S. 2001. Hirschsprung disease, associated syndromes, and genetics: a review. J Med Genet 38: 729–739.
- Amiel J, Laudier B, Attie-Bitach T, Trang H, de Pontual L, Gener B, Trochet D, Etchevers H, Ray P, Simonneau M, Vekemans M, Munnich A, Gaultier C, Lyonnet S. 2003. Polyalanine expansion and frameshift mutations of the paired-like homeobox gene PHOX2B in congenital central hypoventilation syndrome. Nat Genet 33: 459–461.
- Arron JR, Winslow MM, Polleri A, Chang CP, Wu H, Gao X, Neilson JR, Chen L, Heit JJ, Kim SK, Yamasaki N, Miyakawa T, Francke U, Graef IA, Crabtree GR. 2006. NFAT dysregulation by increased dosage of DSCR1 and DYRK1A on chromosome 21. Nature 441: 595–600.
- Attie T, Pelet A, Edery P, Eng C, Mulligan LM, Amiel J, Boutrand L, Beldjord C, Nihoul-Fekete C, Munnich A, Ponder BAJ, Lyonnet S. 1995. Diversity of RET proto-oncogene mutations in familial and sporadic Hirschsprung disease. Hum Mol Genet 4: 1381–1386.
- Badner JA, Sieber WK, Garver KL, Chakravarti A. 1990. A genetic study of Hirschsprung disease. Am J Hum Genet 46: 568–580.
- Beales PL, Badano JL, Ross AJ, Ansley SJ, Hoskins BE, Kirsten B, Mein CA, Froguel P, Scambler PJ, Lewis RA, Lupski JR, Katsanis N. 2003. Genetic interaction of BBS1 mutations with alleles at other BBS loci can result in non-Mendelian Bardet-Biedl syndrome. Am J Hum Genet 72: 1187–1199.
- Bolk S, Pelet A, Hofstra RM, Angrist M, Salomon R, Croaker D, Buys CH, Lyonnet S, Chakravarti A. 2000. A human model for multigenic inheritance: phenotypic expression in Hirschsprung disease requires both the RET gene and a new 9q31 locus. Proc Natl Acad Sci USA 97: 268–273.
- Bondurand N, Natarajan D, Barlow A, Thapar N, Pachnis V. 2006. Maintenance of mammalian enteric nervous system progenitors by SOX10 and endothelin 3 signalling. Development 133: 2075–2086.
- Chattopadhyay P, Pakstis AJ, Mukherjee N, Iyengar S, Odunsi A, Okonofua F, Bonne-Tamir B, Speed W, Kidd JR, Kidd KK. 2003. Global survey of haplotype frequencies and linkage disequilibrium at the RET locus. Eur J Hum Genet 11: 760–769.
- De Calisto J, Araya C, Marchant L, Riaz CF, Mayor R. 2005. Essential role of non-canonical Wnt signalling in neural crest migration. Development 132: 2587–2597.
- de Pontual L, Pelet A, Trochet D, Jaubert F, Espinosa-Parrilla Y, Munnich A, Brunet JF, Goridis C, Feingold J, Lyonnet S, Amiel J. 2006. Mutations of the RET gene in isolated and syndromic Hirschsprung's disease in human disclose major and modifier alleles at a single locus. J Med Genet 43: 419–423.
- Emison ES, McCallion AS, Kashuk CS, Bush RT, Grice E, Lin S, Portnoy ME, Cutler DJ, Green ED, Chakravarti A. 2005. A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk. Nature 434: 857–863.
- Gabriel SB, Salomon R, Pelet A, Angrist M, Amiel J, Fornage M, Attie-Bitach T, Olson JM, Hofstra R, Buys C, Steffann J, Munnich A, Lyonnet S, Chakravarti A. 2002. Segregation at three loci explains familial and population risk in Hirschsprung disease. Nat Genet 31: 89–93.
- Gozal D. 1998. Congenital central hypoventilation syndrome: an update. Pediatr Pulmonol 26: 273–282.
10.1002/(SICI)1099-0496(199810)26:4<273::AID-PPUL7>3.0.CO;2-C CAS PubMed Web of Science® Google Scholar
- Grice EA, Rochelle ES, Green ED, Chakravarti A, McCallion AS. 2005. Evaluation of the RET regulatory landscape reveals the biological relevance of a HSCR-implicated enhancer. Hum Mol Genet 14: 3837–3845.
- Inoue K, Khajavi M, Ohyama T, Hirabayashi S, Wilson J, Reggin JD, Mancias P, Butler IJ, Wilkinson MF, Wegner M, and others. 2004. Molecular mechanism for distinct neurological phenotypes conveyed by allelic truncating mutations. Nat Genet 36: 361–369.
- Owens SE, Broman KW, Wiltshire T, Elmore JB, Bradley KM, Smith JR, Southard-Smith EM. 2005. Genome-wide linkage identifies novel modifier loci of aganglionosis in the Sox10Dom model of Hirschsprung disease. Hum Mol Genet 14: 1549–1558.
- Pelet A, de Pontual L, Clement-Ziza M, Salomon R, Mugnier C, Matsuda F, Lathrop M, Munnich A, Feingold J, Lyonnet S, Abel L, Amiel J. 2005. Homozygosity for a frequent and weakly penetrant predisposing allele at the RET locus in sporadic Hirschsprung disease. J Med Genet 42: e18.
- Ross AJ, May-Simera H, Eichers ER, Kai M, Hill J, Jagger DJ, Leitch CC, Chapple JP, Munro PM, Fisher S, Tan PL, Phillips HM, Leroux MR, Henderson DJ, Murdoch JN, Copp AJ, Eliot MM, Lupski JR, Kemp DT, Dollfus H, Tada M, Katsanis N, Forge A, Beales PL. 2005. Disruption of Bardet-Biedl syndrome ciliary proteins perturbs planar cell polarity in vertebrates. Nat Genet 37: 1135–1140.
- Stone JL, Merriman B, Cantor RM, Yonan AL, Gilliam TC, Geschwind DH, Nelson SF. 2004. Evidence for sex-specific risk alleles in autism spectrum disorder. Am J Hum Genet 75: 1117–1123.
- Trang H, Dehan M, Beaufils F, Zaccaria I, Amiel J, Gaultier C. 2005. The French Congenital Central Hypoventilation Syndrome Registry: general data, phenotype, and genotype. Chest 127: 72–79.
- Trochet D, O'Brien LM, Gozal D, Trang H, Nordenskjold A, Laudier B, Svensson PJ, Uhrig S, Cole T, Niemann S, Munnich A, Gaultier C, Lyonnet S, Amiel J. 2005. PHOX2B genotype allows for prediction of tumor risk in congenital central hypoventilation syndrome. Am J Hum Genet 76: 421–426.
- Van de Putte T, Maruhashi M, Francis A, Nelles L, Kondoh H, Huylebroeck D, Higashi Y. 2003. Mice lacking ZFHX1B, the gene that codes for Smad-interacting protein-1, reveal a role for multiple neural crest cell defects in the etiology of Hirschsprung disease-mental retardation syndrome. Am J Hum Genet 72: 465–470.
- Weiss LA, Abney M, Cook EH Jr, Ober C. 2005. Sex-specific genetic architecture of whole blood serotonin levels. Am J Hum Genet 76: 33–41.
- Wilson M, Mowat D, Dastot-Le Moal F, Cacheux V, Kaariainen H, Cass D, Donnai D, Clayton-Smith J, Townshend S, Curry C, Gattas M, Braddock S, Kerr B, Aftimos S, Zehnwirth H, Barrey C, Goossens M. 2003. Further delineation of the phenotype associated with heterozygous mutations in ZFHX1B. Am J Med Genet A 119: 257–265.