Volume 45, Issue 2 pp. 138-142
LETTER TO THE JOURNAL
Open Access

SYNCRIP promotes cell cycle progression and lung tumorigenesis by modulating AURKB translation

Hyeon Ji Kim

Hyeon Ji Kim

Department of Pharmacology, School of Dentistry, Kyungpook National University, Daegu, Republic of Korea

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Hye Guk Ryu

Hye Guk Ryu

Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea

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Mingyu Kang

Mingyu Kang

Division of Cancer Biology, Research Institute, National Cancer Center, Goyang, Republic of Korea

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Namgyu Lee

Namgyu Lee

Department of Biomedical Science & Systems Biology, Dankook University, Cheonan, Republic of Korea

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Hyo-Jin Kim

Hyo-Jin Kim

ProGen. Co., Ltd., Seoul, Republic of Korea

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Dahye Lee

Dahye Lee

Division of Pulmonology and Critical Care Medicine, Department of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Republic of Korea

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Chaeuk Chung

Chaeuk Chung

Division of Pulmonology and Critical Care Medicine, Department of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Republic of Korea

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Sangjune Kim

Sangjune Kim

Department of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, Republic of Korea

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Kyung-Ha Lee

Kyung-Ha Lee

Department of Molecular Biology, Pusan National University, Busan, Republic of Korea

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Wanil Kim

Wanil Kim

Department of Biochemistry, Department of Convergence Medical Science, Institute of Medical Science, School of Medicine, Gyeongsang National University, Jinju, Republic of Korea

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Jin-Seok Byun

Jin-Seok Byun

Department of Oral Medicine, School of Dentistry, Kyungpook National University, Daegu, Republic of Korea

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Kyong-Tai Kim

Corresponding Author

Kyong-Tai Kim

Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea

Generative Genomics Research Center, Global Green Research & Development Center, Handong Global University, Pohang, Republic of Korea

Correspondence

Do-Yeon Kim, Ph.D., Department of Pharmacology, School of Dentistry, Kyungpook National University, Daegu 41940, Republic of Korea.

Email: [email protected]

Kyong-Tai Kim, Ph.D., Generative Genomics Research Center, Global Green Research & Development Center, Handong Global University, Pohang 37554, Republic of Korea.

Email: [email protected]

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Do-Yeon Kim

Corresponding Author

Do-Yeon Kim

Department of Pharmacology, School of Dentistry, Kyungpook National University, Daegu, Republic of Korea

Correspondence

Do-Yeon Kim, Ph.D., Department of Pharmacology, School of Dentistry, Kyungpook National University, Daegu 41940, Republic of Korea.

Email: [email protected]

Kyong-Tai Kim, Ph.D., Generative Genomics Research Center, Global Green Research & Development Center, Handong Global University, Pohang 37554, Republic of Korea.

Email: [email protected]

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First published: 05 December 2024

Hyeon Ji Kim and Hye Guk Ryu contributed equally to this work.

Abbreviations

  • AURKB
  • Aurora kinase B
  • CHX
  • Cycloheximide
  • FLUC
  • Firefly luciferase
  • INCENP
  • Inner centromere protein
  • IRES
  • Internal ribosome entry sites
  • ITAFs
  • IRES trans-acting factors
  • LSCC
  • Lung squamous cell carcinoma
  • LUAD
  • Lung adenocarcinoma
  • RLUC
  • Renilla luciferase
  • SYNCRIP
  • Synaptotagmin-binding cytoplasmic RNA-Interacting Protein
  • TRAF6
  • TNF receptor associated factor 6
  • Dysregulation of cellular processes, such as cell division and proliferation, is a hallmark of cancer and is driven by the aberrant expression of cell cycle-related genes [1]. Aurora kinase B (AURKB), due to its pivotal role in mitotic progression, has been implicated in various cancers. Overexpression or hyperactivation of AURKB significantly contributes to tumorigenesis and cancer progression [2]. Although mechanisms that enhance AURKB activity, including binding to INCENP, autophosphorylation [3], and ubiquitination by TRAF6 [4], have been extensively investigated, regulation of AURKB synthesis, particularly mRNA translation, remains unclear. The translation of eukaryotic mRNAs typically occurs either through cap-dependent scanning or through direct ribosomal binding to specialized RNA elements known as internal ribosome entry sites (IRES). IRES-mediated translation is strongly influenced by specific RNA-binding proteins, known as IRES trans-acting factors (ITAFs). SYNCRIP (Synaptotagmin-binding cytoplasmic RNA-interacting protein), also known as hnRNP Q, has been identified as an ITAF [5], integrating various aspects of RNA metabolism with key cellular processes. Here, we aim to elucidate the mechanism of AURKB mRNA translation and investigate whether SYNCRIP regulates AURKB mRNA translation in lung cancer.

    To investigate the mechanisms underlying AURKB mRNA translation, we analyzed AURKB protein levels following treatment with rapamycin, an inhibitor of eIF4E-mediated cap-dependent translation, and cycloheximide (CHX), an inhibitor of the elongation phase of translation. Treatment with CHX significantly reduced AURKB protein production, whereas rapamycin had no effect, suggesting that AURKB can be translated via a cap-independent mechanism (Figure 1A, Supplementary Figure S1A-B). To further validate this finding, we used a bicistronic reporter containing the 5′-UTR of AURKB mRNA positioned between the coding sequences for Renilla (RLUC) and Firefly (FLUC) luciferases (Supplementary Figure S1C). This experiment confirmed that the AURKB 5’-UTR facilitates translation of a downstream cistron in a cap-independent manner (Figure 1B, Supplementary Figure S1D).

    Details are in the caption following the image
    Role of SYNCRIP in regulating IRES-mediated translation of Aurkb mRNA in lung cancer cells. (A) NIH3T3 cells were treated with DMSO, rapamycin, or cycloheximide (CHX) for the indicated times and analyzed by western blotting. Membranes were incubated with anti-AURKB, anti-Lamin B1, and anti-phospho-S6RP antibodies. The activity of rapamycin was assayed based on the phosphorylation status of S6RP. Lamin B1 was used as a loading control. (B) Luciferase activity (FLUC/RLUC ratio) was assessed in LLC cells transfected with a dual reporter plasmid. Luciferase activity in pRF mock plasmid-transfected cells was set to 1 (unpaired two-tailed t-test; n = 5; ***P < 0.001). (C) Protein expression levels of AURKB and SYNCRIP in lysates from six normal (N) and six lung cancer tissue (T) samples were measured by Western blot analysis. Actin was included as a control. (D) Immunofluorescence (IF) staining of tissue microarrays containing normal lung tissues and lung cancer tissues with graded progression (AURKB: red, SYNCRIP: green, DAPI: blue). Scale bar, 500 µm. Scatter plot shows the positive correlation between SYNCRIP and AURKB protein expression based on immunostaining intensity (Right; Pearson correlation; n = 63; ***P < 0.001). (E) Confirmation of the interaction between the 5′-UTR of Aurkb mRNA and SYNCRIP by RNA affinity purification, followed by Western blotting. 14-3-3ζ was used as a negative control for the RNA pull-down assay. (F) IRES activity following deletion of 116 and 247 nucleotides from the Aurkb 5′-UTR sequence. Luciferase activity of the mock vector was set to 1 (one-way ANOVA with Dunnett's multiple comparison test; n = 3; *P < 0.05, **P < 0.01, ***P < 0.001, ns = not significant). (G) Western blot analyses of AURKB and SYNCRIP in LC-GFP and Syncrip-deficient LLC cells. Actin served as a loading control. Relative band intensities of AURKB are presented below the bands, with control cells set to an arbitrarily value of 1. (H) Measurement of translational activity of the 5′-UTR of Aurkb mRNA in LC-GFP and Syncrip-deficient LLC cells. Luciferase activity in pRF mock plasmid-transfected cells was set to 1 (two-way ANOVA with Šidák's multiple comparisons; n = 3; ***P < 0.001). (I−J) Control and Syncrip-deficient LLC cells were transfected with EGFP-mock (Mock) or EGFP-SYNCRIP (Rescue) for 48 hours. Western blot analysis (I) and luciferase activity assay (J) were performed. Actin was used as a loading control. Luciferase activity of pRF mock plasmid-transfected cells was set to 1 (two-way ANOVA with Šidák's multiple comparisons; n = 3; ***P < 0.001). (K) Colony formation assays of control and Syncrip-deficient LLC cells. Colonies were quantified by measuring the absorbance of extracted crystal violet at 595 nm (bottom; unpaired two-tailed t-test; n = 6; ***P < 0.001). (L) Appearance of tumors sacrificed and harvested on day 30 post-injection. The graph shows the average volume of tumors per day for 30 days (bottom; two-way analysis of variance with multiple comparisons; n = 4; ***P < 0.001 and ns = not significant). (M) Phase-contrast images of day 7 and day 14 organoids (SB#371 and SB#369) transfected with Cas9 and sgRNA targeting either control or SYNCRIP. Scale bar = 200 µm. (N) Quantification of organoid diameter on day 14 for SB#371 and SB#369 (unpaired two-tailed t-test; n = 40-80 per group; ***P < 0.001, **P < 0.01). All data are presented as the mean ± SD. (O−P) Appearance of tumors harvested on day 18 post-injection. The graph displays the average volume of tumors by day. (two-way analysis of variance with multiple comparisons; ***P < 0.001, ns = not significant.). (Control: n = 14, #2: n = 8, #15: n = 6). (Q) Mice were subcutaneously injected in both flanks with control or Aurkb cis-acting region-deficient cell lines (#2 and #15). Representative bioluminescence images on day 18 post-injection. (R) Graphs show the total bioluminescence flux (photons/s) within the same flank region of interest for #2 and #15. Lines represent the mean (unpaired two-tailed t-test; n = 4 mice, randomly; ***P < 0.001). All quantitative data are presented as the mean ± SEM. Abbreviations: AURKB 5′U, luciferase reporter vector with 5′-UTR of AURKB mRNA; CHX, cycloheximide; EGFP-mock, control vector; EGFP-SYNCRIP, vector of wild-type SYNCRIP; FLUC, Firefly luciferase; IF, immunofluorescence; N, normal tissue; RLUC, Renilla luciferase; SYNCRIP, sgRNA targeting SYNCRIP using CRISPR/Cas9; T, lung cancer tissue.

    We next examined the correlation between AURKB and SYNCRIP protein expression in human lung cancer tissues. Utilizing the LinkedOmics database, we identified 11,466 genes associated with SYNCRIP in lung adenocarcinoma (LUAD) and 11,928 genes in lung squamous cell carcinoma (LSCC) (Supplementary Figure S2A-B) [6]. Gene set enrichment analysis revealed a strong positive correlation between AURKB and SYNCRIP in both LUAD and LSCC (Supplementary Figure S2C-G). Additionally, immunoblot analysis revealed higher expression levels of both proteins in tumor tissues compared to adjacent normal tissues (Figure 1C). We further validated the correlation between these proteins across various types of lung cancer using lung tissue microarrays (Figure 1D). In LUAD, the expression of AURKB and SYNCRIP significantly increased with cancer progression (Supplementary Figure S3A-B). Previous report has shown that SYNCRIP binds to specific mRNA sequences, such as UAUYRR or AYAAYY (Y = C/U, R = A/G), and affects the translation of target mRNAs [7]. An RNA pull-down assay confirmed the association between SYNCRIP and the Aurkb 5'-UTR (Figure 1E). We identified potential cis-acting elements within the 5′-UTR that are crucial for IRES-mediated translation (Figure 1F, Supplementary Figure S3C-D). These results suggest that SYNCRIP functions as a trans-acting factor in the translation of AURKB mRNA.

    To validate SYNCRIP-mediated AURKB expression, we knocked out SYNCRIP using CRISPR/Cas9 (LC-SYNCRIP; Supplementary Figure S4A). SYNCRIP deficiency resulted in a reduction of AURKB protein levels (Figure 1G, Supplementary Figure S4B), while AURKB mRNA levels remained unchanged (Supplementary Figure S4C). We then examined whether SYNCRIP modulates the translational activity of AURKB mRNA in a cap-independent manner. In SYNCRIP-deficient cells, IRES-mediated translation of AURKB mRNA was significantly downregulated (Figure 1H, Supplementary Figure S4D). The absence of SYNCRIP also led to an increased proportion of cells in the G2/M phase (Supplementary Figure S4E-F). Rescue experiments restored AURKB protein levels and IRES activity of the 5′-UTR of Aurkb mRNA in Syncrip-restored LLC cells (Figure 1I-J). These results suggest that SYNCRIP knockout suppresses AURKB protein expression by inhibiting its IRES-mediated translation, resulting in G2/M phase arrest.

    SYNCRIP deficiency led to a clear reduction in colony-forming capacity and growth (Figure 1K, Supplementary Figure S4G-H). In a xenograft mouse model, tumors derived from SYNCRIP knockout cells were notably smaller in both volume and size compared to those derived from control cells (Figure 1L). Additionally, adenocarcinoma patient-derived organoids transfected with sgRNA targeting SYNCRIP and Cas9 exhibited reduced growth (Figure 1M-N). These results suggest that SYNCRIP plays a crucial role in the proliferation of lung cancer cells.

    To exclude off-target effects of SYNCRIP and confirm the role of the AURKB 5′-UTR in translational regulation, we created a cis-acting region deletion model by removing the 21-221 nucleotide region of the Aurkb mRNA 5′-UTR in LLC cells (Supplementary Figure S5). Deletion of the cis-acting domain in the Aurkb 5′-UTR disrupted cell proliferation and reduced colony-forming ability, similar to SYNCRIP-deficient cells (Supplementary Figure S6A-B). Two randomly selected cell lines (#2 and #15) showed decreased AURKB protein levels and a reduction in phospho-histone H3 (Ser10). Moreover, both cell lines exhibited an increased proportion of cells arrested in the G2/M phase compared to the control group (Supplementary Figure S6C-E). These cell lines also displayed significantly reduced tumor growth in vivo (Figure 1O-R). These results indicate that inhibiting AURKB expression suppresses tumor growth both in vitro and in vivo, underscoring the importance of the AURKB 5′-UTR in regulating its protein expression.

    In conclusion, our findings provide new insights into the translational regulation of AURKB in LUAD. The upregulation of AURKB by SYNCRIP not only emphasizes its role in cell cycle progression but also highlights its potential involvement in tumorigenesis. Recently, new functions for SYNCRIP have been identified in various cancers, including leukemia [8] and prostate cancer [9]. The importance of SYNCRIP extends beyond cell cycling to genomic stability and drug resistance [9]. Understanding the detailed mechanisms of SYNCRIP in various cancers could provide crucial evidence for the development of a novel class of anticancer therapeutics in the future.

    DECLARATIONS

    AUTHOR CONTRIBUTIONS

    Study design and conception: Kyong-Tai Kim and Do-Yeon Kim. Data acquisition and analysis: Hyeon Ji Kim, Hye Guk Ryu, Mingyu Kang, Namgyu Lee, Hyo-Jin Kim, Sangjune Kim, Kyung-Ha Lee, Wanil Kim, and Jin-Seok Byun. Technical and material support: Dahye Lee and Chaeuk Chung. Data interpretation and discussion: Hyeon Ji Kim, Hye Guk Ryu, Kyong-Tai Kim, and Do-Yeon Kim. Manuscript writing: Hyeon Ji Kim, Hye Guk Ryu, Kyong-Tai Kim, and Do-Yeon Kim. Manuscript editing and approval of the present version: all authors.

    ACKNOWLEDGEMENTS

    The Biospecimens used in this study were provided by the Biobank of AJOU University Hospital, a member of Korea Biobank Network.

      CONFLICT OF INTEREST STATEMENT

      The authors declare no conflicts of interest.

      FUNDING INFORMATION

      This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2022R1C1C1006181, 2022R1A6A3A13071217, and RS-2023-00272063). This work was also supported by funds donated by Dr Jae Kyu Lee and Mr Jason Gim.

      ETHICS APPROVAL AND CONSENT TO PARTICIPATE

      Male ICR mice aged 10-12 weeks were used, and all animal protocols were approved by Kyungpook National University Animal Care Committee (KNU 2022-0248).

      DATA AVAILABILITY STATEMENT

      The data supporting the results of this study are presented in the online Supplementary Materials. The datasets utilized in this study can be obtained from the corresponding author upon a reasonable request.

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