β-Alanine containing peptides: A novel molecular tool for the design of γ-turns
Corresponding Author
V. Pavone
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, ItalySearch for more papers by this authorA. Lombardi
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorG. D'auria
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorM. Saviano
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorF. Nastri
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorL Paolillo
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorB. Di Blasio
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorC. Redone
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorCorresponding Author
V. Pavone
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, ItalySearch for more papers by this authorA. Lombardi
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorG. D'auria
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorM. Saviano
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorF. Nastri
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorL Paolillo
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorB. Di Blasio
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorC. Redone
Research Center on Bioactive Peptides, University of Napoli Federico II, Via Mezzocannone 4, 80134, Napoli, Italy
Search for more papers by this authorAbstract
In the present paper we describe the synthesis, purification, single crystal x-ray analysis, and solution conformational characterization of the cyclic tetrapeptide cyclo- (L-Pro-γ-Ala-L-Pro-γ-Ala). This peptide was synthesized by classical solution methods and the cyclization of the free tetrapeptide was accomplished in good yields in diluted methylene chloride solution using N, N-dicyclohexyl-carbodiimide (DCCI). The compound crystallizes in the orthorombic space group P212121 from ethyl acetate. All peptide bonds are trans. The molecular conformation is stabilized by two intramolecular hydrogen bonds between the CO and NH groups of the two β-alanine residues. These hydrogen bonds take part in a C7 structure in which both proline residues occupy the 2 position of an inverse γ-turn. The two β-alanine residues have a typical folded conformation (around the Cα-Cβ bond) observed in other cyclic peptides containing this residue. A detailed 1H-nmr analysis in CD3CN solution has been carried out. The molecule assumes a twofold symmetry in solution with a molecular conformation consistent with that observed in the solid state.
References
- 1 Kessler, H. (1982) Angew. Chemie 21, 512–523.
- 2 Pavone, V., Lombardi, A., Yang, X., Pedone, C. & Di Blasio, B. (1990) Biopolymers 30, 189–196.
- 3 Di Blasio, B., Lombardi, A., Yang, X., Pedone, C. & Pavone, V. Biopolymers, in press.
- 4 Baker, E. N. & Hubbard, R. E. (1984) Prog. Biophys. Mol. Biol. 44, 97–179.
- 5 Milner-White, E. J. & Poet, R. (1986) Biochem. J. 240, 289–292.
- 6 Milner-White, E. J. & Poet, R. (1987) Trends Biochem. Sci. 12, 189–192.
- 7 Milner-White, J. E., Ross, B. M., Ismail, R., Belhadj-Mostefa, K. & Poet, R. (1988) J. Mol. Biol. 204, 777–782.
- 8 Krause, J. A. & Eggleston, D. S. (1991) in Proceedings of the 12th American Peptide Symposium, Smith, J. A. and Rivier, J. R., Eds., ESCOM, Leiden-E.E., Boston, MA, June, in press.
- 9 Flippen, J. L. & Karle, I. L. (1976) Biopolymers 15, 1081–1092.
- 10 Karle, I. L. (1978) J. Am. Chem. Soc. 100, 1286–1289.
- 11 Karle, I. L. (1981) in Perspectives in Peptides Chemistry, A. Eberle, R. Geiger & T. Weiland, Eds., Karger & Basal, pp. 261–271.
- 12 Pease, L. G., Frey, M. H. & Opella, S. J. (1981) J. Am. Chem. Soc. 103, 467–468.
- 13 Di Blasio, B., Rossi, F., Benedetti, E., Pavone, V., Pedone, C., Temussi, P. A., Zanotti, G. & Tancredi, T. (1989) J. Am. Chem. Soc. 111, 9089–9098.
- 14 Pease, L. G. & Watson, C. (1978) J. Am. Chem. Soc. 100, 1279–1286.
- 15 Rich, D. H., Kawai, M. & Jasensky, R. D. (1983) Int. J. Peptide Protein Chem. 21, 35–42.
- 16 Spatola, A. F., Anwer, M. K., Rockwell, A. L. & Gierasch, L. M. (1986) J. Am. Chem. Soc. 108, 825–831.
- 17 Sumner, S. C. J. & Ferretti, J. A. (1989) FEBS Lett. 253, 117–120.
- 18 Kessler, H., Hehlein, W. & Schuck, R. (1982) J. Am. Chem. Soc. 104, 4534–4540.
- 19 Demel, D. & Kessler, H. (1976) Tetrahed. Lett. 32, 2801–2804.
- 20 Kessler, H., Bara, Y. A., Friedrich, A., Hehiein, W., Kondor, P. & Molter, M. (1977) in Peptides, Proceedings of the 5th American Peptide Symposium, Goodman, M. & J. Meienhofer, Eds., John Wiley & Sons, New York, pp. 343–345.
- 21 Kondor, P. & Kessler, H. (1979) in Peptides: Structure and Biological Function, Proceedings of the 6th American Peptide Symposium, Gross, E. & J. Meienhofer, Eds., Pierce Chemical Company, Rockford, IL, pp. 181–184.
- 22 Bara, Y. A., Friedrich, A., Kessler, H. & Molter, M. (1978) Chem. Ber. 111, 1045–1057.
- 23 Kessler, H. & Kondor, P. (1979) Chem. Ber. 112, 3538–3551.
- 24 Kessler, H. & Holzemann, G. (1981) Angew. Chemie 20, 124–125.
- 25 Kessler, H. & Holzemann, G. (1981) Liebigs Ann. Chem. 2028–2044.
- 26 Kessler, H. & Kogler, H. (1983) Liebigs Ann. Chem. 316–329.
- 27 Kessler, H. & Bernd, M. (1985) Liebigs Ann. Chem. 1145–1167.
- 28 Kessler, H., Kutscher, B. & Klein, A. (1986) Liebigs Ann. Chem. 893–913.
- 29 Kessler, H., Kutscher, B. & Klein, A. (1986) Liebigs Ann. Chem. 893–913.
- 30 Kessler, H., Klein, A. G., Obermeier, R. & Will, M. (1989) Liebigs Ann. Chem. 269–294.
- 31 Kessler, H. & Eiermann, V. (1982) Tetrahed. Lett. 23, 4689–4692.
- 32 Kessler, H., Kutscher, B., Kerssebaum, R., Klein, A. & Lautz, J. (1984) in Peptides: Structure and Function, Proceedings of the 9th American Peptide Symposium, C. M. Deber, V. J. Hruby & K. D. Kopple, Eds., Pierce Chemical Company, Rockford, IL, pp. 83–92.
- 33 Bruch, M. D., Noggle, J. H. & Gierasch, L. M. (1985) J. Am. Chem. Soc. 107, 1400–1407.
- 34 Pease, L. G. (1979) in Peptides: Structure and Biological Function, Proceedings of the 6th American Peptide Symposium, Gross, E. & J. Meienhofer, Eds., Pierce Chemical Company, Rockford, IL, pp. 197–200.
- 35 Bach, A. C. & Gierasch, L. M. (1985) J. Am. Chem. Soc. 107, 3349–3350.
- 36 Pease, L. G., Niu, C. H. & Zimmermann, G. (1979) J. Am. Chem. Soc. 101, 184–191.
- 37 Lii, J. H. & Allinger, N. L. (1991) J. Comp. Chem. 12, 186–199.
- 38 Lautz, J., Kessler, H., Boelens, R., Kaptein, R. & Van Gunsteren, W. F. (1987) Int. J. Peptide Protein Chem. 30, 404–414.
- 39 Kessler, H., Bats, J. W., Griesinger, C., Koll, S., Will, M. & Wagner, K. (1988) J. Am. Chem. Soc. 110, 1033–1049.
- 40 Benedetti, E. (1982) in Chemistry and Biochemistry of Amino Acids, Peptides and Proteins, Vol. 6, B. Weinstein, Ed., Marcel Dekker, New York and Basel, p. 138.
- 41 Sapse, A. M., Mallah-Levy, L., Daniels, S. B. & Frick-son, B. W. (1987) J. Am. Chem. Soc. 109, 3526–3529.
- 42 Smith, J. A. & Pease, L. G. (1980) CRC Crit. Rev. Biochem. 4, 165–201.
- 43 Rose, G. D., Gierasch, L. M. & Smith, J. A. (1985) in Advanced Protein Chemistry, C. B. Anfinsen, J. T. Edsall and F. M. Richards Eds, Academic Press, Orlando, FL, pp. 1–109.
- 44 Main, P., Fiske, S. J., Hull, S. E., Lessinger, L., Germain, G., Declercq, J. P. & Woolfson, M. M. (1980) MULTAN80, a System of Computer Programs for the Automatic Solution of Crystal Structures for X-Ray Diffraction Data, University of York, England.
- 45 Cromer, D. T. & Waber, J. T. (1984) International Tables for X-Ray Crystallography, Vol. 4 The Kynoch Press Birmingham, England, Table 2.2 B, p. 99.
- 46 Frenz, B. A. & Associates Int. (1986) Structure Determination Package, A System of Computer Programs, College Station, TX, and Enraf Nonius, Delft, Holland.
- 47 Piantini, U., Sorensen, O. W. & Ernst, R. R. (1982) J. Am. Chem. Soc. 104, 6800–6801.
- 48 Bax, A. & Davis, D. G. (1985) J. Magn. Res. 65, 355–360.
- 49
Wüthrich, K.
(1986)
NMR of Proteins and Nucleic Acids,
Wiley, New York.
10.1051/epn/19861701011 Google Scholar
- 50 Summers, M. F., Marzilli, L. G. & Bax, A. (1986) J. Am. Chem. Soc. 108, 4285–4294.
- 51 Kessler, H., Bermel, W., Friedrich, A., Krack, G. & Hull, W. E. (1982) J. Am. Chem. Soc. 104, 6297–6304.
- 52 Neuhaus, D. & Williamson, M. (1989) The Nuclear Overhauser Effect in Structural and Conformational Analysis, VCH Publishers, New York.
- 53 Balasubramanian, R., Lakshminarayanan, A. V., Sabesan, M. N., Tegoni, G., Venkatesan, K. & Ramachandran, G. N. (1971) Int. J. Peptide Protein Res. 3, 25–33.
- 54 Karle, I. L., Handa, B. K. & Hassall, C. H. (1975) Acta Cryst. B 31, 555–560.
- 55 Freeman, H. C. & Szymansky, J. T. (1967) Acta Cryst. 22, 406–417.
- 56 Barrans, Y., Bellocq, A. M., Cotrait, M. & Richard, H. (1976) J. Mol. Struct. 30, 225–242.
- 57 Itoh, H., Yamane, T. & Ashida, T. (1977) Acta Cryst. B 33, 2959–2961.
- 58 Cotrait, M., Prigent, J. & Garrigou-Lagrange, C. (1977) J. Mol. Struct. 39, 175–187.
- 59 Valle, G., Bonora, G. M. & Toniolo, C. (1984) Gazz. Chim. Ital. 114, 341–347.
- 60 Benedetti, E., Bavoso, A., Di Blasio, B., Grimaldi, P., Pavone, V., Pedone, C., Toniolo, C. & Bonora, G. M. (1985) Int. J. Biol. Macromol. 7, 81–88.
- 61 Papavinasam, E., Natarajan, S. & Shivaprakash, N. C. (1986) Int. J. Peptide Protein Res. 28, 525–528.
- 62 Cerrini, S., Lamba, D., Scatturin, A. & Ughetto, G. (1989) Biopolymers 28, 409–420.
- 63 White, D. N. J. & Guy, M. H. P. (1975) JCS Perkin II, 43–46.
- 64 White, D. N. J., Morrow, C., Cox, P. J., Drey, C. N. C. & Lowbridge, J. (1982) JCS Perkin II 239–243.
- 65 Springer, J. P., Cole, R. J., Dorner, J. W., Cox, R. H., Richard, J. C., Barnes, C. L. & van der Helm, D. (1984) J. Am. Chem. Soc. 106, 2388–2392.
- 66 Snyder, J. P. (1984) J. Am. Chem. Soc. 106, 2393–2400.
- 67 Steiner, J. R. & Barnes, C. L. (1988) Int. J. Peptide Protein Res. 31, 212–219.
- 68 Cerrini, S., Gavuzzo, E., Lucente, G., Pinnen, F. & Zanotti, G. (1989) Int. J. Peptide Protein Res. 33, 6–13.
- 69 Clore, G. M. & Gronenborn, A. M. (1989) CRC Crit. Rev. Biochem. Mol. Biol. 24, 479–564.
- 70 Pavone et al., manuscript in preparation.