Species-Dependent Proteomics
Katja Baerenfaller
ETH Zürich, Institute of Plant Sciences, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorWilhelm Gruissem
ETH Zürich, Institute of Plant Sciences, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorSacha Baginsky
ETH Zürich, LFW E51.1, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorAnsgar Poetsch
Ruhr-University Bochum, Medical Proteome-Center, Universitätsstrasse 150, Germany
Search for more papers by this authorDirk Wolters
Ruhr-Universität Bochum, Analytische Chemie NC 4/72, Biomolekulare Massenspektrometrie, Universitätsstrasse 150, 44801 Bochum, Germany
Search for more papers by this authorKai Sohn
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorEkkehard Hiller
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorSteffen Rupp
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorKatja Baerenfaller
ETH Zürich, Institute of Plant Sciences, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorWilhelm Gruissem
ETH Zürich, Institute of Plant Sciences, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorSacha Baginsky
ETH Zürich, LFW E51.1, Universitätsstrasse 2, 8092 Zürich, Switzerland
Search for more papers by this authorAnsgar Poetsch
Ruhr-University Bochum, Medical Proteome-Center, Universitätsstrasse 150, Germany
Search for more papers by this authorDirk Wolters
Ruhr-Universität Bochum, Analytische Chemie NC 4/72, Biomolekulare Massenspektrometrie, Universitätsstrasse 150, 44801 Bochum, Germany
Search for more papers by this authorKai Sohn
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorEkkehard Hiller
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorSteffen Rupp
Fraunhofer Institute for Interfacial, Engineering and Biotechnology (IGB), Department of Molecular Biotechnology, Nobelstrasse 12, 70569 Stuttgart, Germany
Search for more papers by this authorDr. Jörg von Hagen
Merck KGaA, Chromatography and Bioscience, Frankfurter Strasse 250, 64271 Darmstadt, Germany
Search for more papers by this authorSummary
This chapter contains sections titled:
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Sample Preparation and Data Processing in Plant Proteomics
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References
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Sample Preparation for MudPIT with Bacterial Protein Samples
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References
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Sample Preparation for the Cell-Wall Proteome Analysis of Yeast and Fungi
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References
References
- Rossignol, M., Peltier, J.B., Mock, H.P., Matros, A., Maldonado, A.M. and Jorrin, J.V. (2006) Plant proteome analysis: A 2004–2006 update. Proteomics, 6, 5529–5548.
- Greenbaum, D., Colangelo, C., Williams, K. and Gerstein, M. (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol., 4, 117.
- Jamet, E., Canut, H., Boudart, G. and Pont-Lezica, R.F. (2006) Cell wall proteins: a new insight through proteomics. Trends Plant Sci., 11, 33–39.
- Capek, P., Renard, C.M. and Thibault, J.F. (1995) Enzymatic degradation of cell walls of apples and characterization of solubilized products. Int. J. Biol. Macromol., 17, 337–340.
- Feiz, L., Irshad, M., Pont-Lezica, R.F., Canut, H. and Jamet, E. (2006) Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls. Plant Methods, 2, 10.
- Baginsky, S. and Gruissem, W. (2004) Chloroplast proteomics: potentials and challenges. J. Exp. Botany, 55, 1213–1220.
- Baginsky, S. and Gruissem, W. (2006) Arabidopsis thaliana proteomics: from proteome to genome. J. Exp. Botany, 57, 1485–1491.
- Friso, G., Giacomelli, L., Ytterberg, A.J., Peltier, J.B., Rudella, A., Sun, Q. and Wijk, K.J. (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell, 16, 478–499.
- Kleffmann, T., Russenberger, D., von Zychlinski, A., Christopher, W., Sjolander, K., Gruissem, W. and Baginsky, S. (2004) The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr. Biol., 14, 354–362.
- Villarejo, A., Buren, S., Larsson, S., Dejardin, A., Monne, M., Rudhe, C., Karlsson, J., Jansson, S., et al. (2005) Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast. Nat. Cell Biol., 7, 1224–1231.
- Saravanan, R.S. and Rose, J.K. (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics, 4, 2522–2532.
- Wang, W., Scali, M., Vignani, R., Spadafora, A., Sensi, E., Mazzuca, S. and Cresti, M. (2003) Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds. Electrophoresis, 24, 2369–2375.
- Wang, W., Vignani, R., Scali, M. and Cresti, M. (2006) A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis, 27, 2782–2786.
- Song, J., Braun, G., Bevis, E. and Doncaster, K. (2006) A simple protocol for protein extraction of recalcitrant fruit tissues suitable for 2-DE and MS analysis. Electrophoresis, 27, 3144–3151.
- Vander Mijnsbrugge, K., Meyermans, H., Van Montagu, M., Bauw, G. and Boerjan, W. (2000) Wood formation in poplar: identification, characterization, and seasonal variation of xylem proteins. Planta, 210, 589–598.
- www.ncbi.nlm.nih.gov/Genomes/.
- Initiative, T.A.G. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796–815.
- Tuskan, G.A., Difazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 313, 1596–1604.
- Siddique, M.A., Grossmann, J., Gruissem, W. and Baginsky, S. (2006) Proteome analysis of bell pepper (Capsicum annum L.) chromoplasts. Plant Cell Physiol., 47, 1663–1673.
- von Zychlinski, A., Kleffmann, T., Krishnamurthy, N., Sjolander, K., Baginsky, S. and Gruissem, W. (2005) Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions. Mol. Cell. Proteomics, 4, 1072–1084.
- Isaacson, T., Damasceno, C.M., Saravanan, R.S., He, Y., Catala, C., Saladie, M. and Rose, J.K. (2006) Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nature Protocols, 1, 769–774.
- Carpentier, S.C., Witters, E., Laukens, K., Deckers, P., Swennen, R. and Panis, B. (2005) Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics, 5, 2497–2507.
- Hurkman, W.J. and Tanaka, C.K. (1986) Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresis. Plant Physiol., 81, 802–806.
-
Kim, S.T.,
Cho, K.S.,
Jang, Y.S. and
Kang, K.Y.
(2001)
Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays.
Electrophoresis,
22,
2103–2109.
10.1002/1522-2683(200106)22:10<2103::AID-ELPS2103>3.0.CO;2-W CAS PubMed Web of Science® Google Scholar
- Washburn, M.P., Wolters, D. and Yates, J.R., III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol., 19, 242–247.
- Shevchenko, A., de Sousa, M.M., Waridel, P., Bittencourt, S.T., de Sousa, M.V. and Shevchenko, A. (2005) Sequence similarity-based proteomics in insects: characterization of the larvae venom of the Brazilian moth Cerodirphia speciosa. J. Proteome Res., 4, 862–869.
- Baginsky, S., Grossmann, J. and Gruissem, W. (2007) Proteome analysis of chloroplast mRNA processing and degradation. J. Proteome Res., 6, 809–820.
- Nesvizhskii, A.I., Roos, F.F., Grossmann, J., Vogelzang, M., Eddes, J.S., Gruissem, W., Baginsky, S. and Aebersold, R. (2006) Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol. Cell. Proteomics, 5, 652–670.
- Frank, A. and Pevzner, P. (2005) PepNovo: de novo peptide sequencing via probabilistic network modeling. Anal. Chem., 77, 964–973.
- Fischer, B., Roth, V., Roos, F., Grossmann, J., Baginsky, S., Widmayer, P., Gruissem, W. and Buhmann, J.M. (2005) NovoHMM: a hidden Markov model for de novo peptide sequencing. Anal. Chem., 77, 7265–7273.
- Hjerno, K., Alm, R., Canback, B., Matthiesen, R., Trajkovski, K., Bjork, L., Roepstorff, P. and Emanuelsson, C. (2006) Down-regulation of the strawberry Bet v1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant. Proteomics, 6, 1574–1587.
- Padliya, N.D. and Cooper, B. (2006) Mass spectrometry-based proteomics for the detection of plant pathogens. Proteomics, 6, 4069–4075.
- Van Bogelen, R.A., Schiller, E.E., Thomas, J.D. and Neidhardt, F.C. (1999) Diagnosis of cellular states of microbial organisms using proteomics. Electrophoresis, 20, 2149–2159.
- Volker, U. and Hecker, M. (2005) From genomics via proteomics to cellular physiology of the Gram-positive model organism Bacillus subtilis. Cell Microbiol., 7, 1077–1085.
- VerBerkmoes, N.C., Connelly, H.M., Pan, C. and Hettich, R.L. (2004) Mass spectrometric approaches for characterizing bacterial proteomes. Expert Rev. Proteomics, 1, 433–447.
- Han, M.J. and Lee, S.Y. (2006) The Escherichia coli proteome: past, present, and future prospects. Microbiol. Mol. Biol. Rev., 70, 362–439.
- Klose, J. (1975) Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik, 26, 231–243.
- O'Farrell, P. (1975) High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem., 250, 4007–4021.
- Pedersen, S., Bloch, P.L., Reeh, S. and Neidhardt, F.C. (1978) Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates. Cell, 14, 179–190.
- Gygi, S.P., Corthals, G.L., Zhang, Y., Rochon, Y. and Aebersold, R. (2000) Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl. Acad. Sci. USA, 97, 9390–9395.
- Link, A.J., Eng, J., Schieltz, D., Carmack, E., Mize, G.J., Morris, D.R., Garvik, B.B. and Yates, J.R., III (1999) Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol., 17, 676–682.
- Wolters, D.A., Washburn, M.P. and Yates, J.R., III (2001) An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem., 73, 5683–5690.
- Washburn, M.P., Wolters, D. and Yates, J.R., III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol., 19, 242–247.
- Gatlin, C.L., Kleemann, G.R., Hays, L.G., Link, A.J. and Yates, J.R., III (1998) Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography-microspray and nanospray mass spectrometry. Anal. Biochem., 263, 93–101.
- Koller, A., Washburn, M.P., Lange, B.M., Andon, N.L., Deciu, C., Haynes, P.A., Hays, L., Schieltz, D., Ulaszek, R., Wei, J., Wolters, D. and Yates, J.R., III (2002) Proteomic survey of metabolic pathways in rice. Proc. Natl. Acad. Sci. USA, 99, 11969–11974.
- Brown, S.D., Thompson, M.R., Verberkmoes, N.C., Chourey, K., Shah, M., Zhou, J., Hettich, R.L. and Thompson, D.K. (2006) Molecular dynamics of the Shewanella oneidensis response to chromate stress. Mol. Cell. Proteomics, 5, 1054–1071.
- Krishnamurthy, T., Hewel, J., Bonzagni, N.J., Dabbs, J., Bull, R.L. and Yates, J.R., III (2006) Simultaneous identification and verification of Bacillus anthracis. Rapid Commun. Mass Spectrom., 20, 2053–2056.
- Skipp, P., Robinson, J., O'Connor, C.D. and Clarke, I.N. (2005) Shotgun proteomic analysis of Chlamydia trachomatis. Proteomics, 5, 1558–1573.
- Scherl, A., Francois, P., Bento, M., Deshusses, J.M., Charbonnier, Y., Converset, V., Huyghe, A., Walter, N., Hoogland, C., Appel, R.D., Sanchez, J.C., Zimmermann-Ivol, C.G., Corthals, G.L., Hochstrasser, D.F. and Schrenzel, J. (2005) Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth. J. Microbiol. Methods, 60, 247–257.
- Coldham, N.G. and Woodward, M.J. (2004) Characterization of the Salmonella typhimurium proteome by semi-automated two dimensional HPLC-mass spectrometry: detection of proteins implicated in multiple antibiotic resistance. J. Proteome Res., 3, 595–603.
- Vollmer, M., Horth, P. and Nagele, E. (2004) Optimization of two-dimensional off-line LC/MS separations to improve resolution of complex proteomic samples. Anal. Chem., 76, 5180–5185.
- Corbin, R.W., Paliy, O., Yang, F., Shabanowitz, J., Platt, M., Lyons, C.E., Jr. Root, K., McAuliffe, J., Jordan, M.I., Kustu, S., Soupene, E. and Hunt, D.F. (2003) Toward a protein profile of Escherichia coli: comparison to its transcription profile. Proc. Natl. Acad. Sci. USA, 100, 9232–9237.
- Kohler, C., Wolff, S., Albrecht, D., Fuchs, S., Becher, D., Buttner, K., Engelmann, S. and Hecker, M. (2005) Proteome analyses of Staphylococcus aureus in growing and non-growing cells: a physiological approach. Int. J. Med. Microbiol., 295, 547–565.
- Gao, F.P. and Cross, T.A. (2005) Recent developments in membrane-protein structural genomics. Genome Biol., 6, 244.
- Wallin, E. and von Heijne, G. (1998) Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci., 7, 1029–1038.
- Hopkins, A.L. and Groom, C.R. (2003) The druggable genome. Nat. Rev. Drug Discov., 1, 727–730.
- Zischka, H., Weber, G., Weber, P.J., Posch, A., Braun, R.J., Buhringer, D., Schneider, U., Nissum, M., Meitinger, T., Ueffing, M. and Eckerskorn, C. (2003) Improved proteome analysis of Saccharomyces cerevisiae mitochondria by free-flow electrophoresis. Proteomics, 3, 906–916.
- Xiong, Y., Chalmers, M.J., Gao, F.P., Cross, T.A. and Marshall, A.G. (2005) Identification of Mycobacterium tuberculosis H37Rv integral membrane proteins by one-dimensional gel electrophoresis and liquid chromatography electrospray ionization tandem mass spectrometry. J. Proteome Res., 4, 855–861.
- Fujiki, Y., Hubbard, A.L., Fowler, S. and Lazarow, P.B. (1982) Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum. J. Cell Biol., 93, 97–102.
- Wu, C.C. and Yates, J.R. (2003) The application of mass spectrometry to membrane proteomics. Nat. Biotechnol., 21, 262–267.
-
Santoni, V.,
Molloy, M. and
Rabilloud, T.
(2000)
Membrane proteins and proteomics: un amour impossible?
Electrophoresis,
21,
1054–1070.
10.1002/(SICI)1522-2683(20000401)21:6<1054::AID-ELPS1054>3.0.CO;2-8 CAS PubMed Web of Science® Google Scholar
- Molloy, M.P., Phadke, N.D., Chen, H., Tyldesley, R., Garfin, D.E., Maddock, J.R. and Andrews, P.C. (2002) Profiling the alkaline membrane proteome of Caulobacter crescentus with two-dimensional electrophoresis and mass spectrometry. Proteomics, 2, 899–910.
- Klein, C., Garcia-Rizo, C., Bisle, B., Scheffer, B., Zischka, H., Pfeiffer, F., Siedler, F. and Oesterhelt, D. (2005) The membrane proteome of Halobacterium salinarum. Proteomics, 5, 180–197.
- Wu, C.C., MacCoss, M.J., Howell, K.E. and Yates, J.R. (2003) A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol., 21, 532–538.
- Blonder, J., Conrads, T.P., Yu, L.R., Terunuma, A., Janini, G.M., Issaq, H.J., Vogel, J.C. and Veenstra, T.D. (2004) A detergent- and cyanogen bromide-free method for integral membrane proteomics: Application to Halobacterium purple membranes and the human epidermal membrane proteome. Proteomics, 4, 31–45.
- Kyte, J. and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105–132.
- Venters, R.A., Huang, C.C., Farmer, B.T., II, Trolard, R., Spicer, L.D. and Fierke, C.A. (1995) High-level 2H/13C/15N labeling of proteins for NMR studies. J. Biomol. NMR, 5, 339–344.
- MacCoss, M.J., Wu, C.C., Liu, H., Sadygov, R. and Yates, J.R., III (2003) A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem., 75, 6912–6921.
- Regonesi, M.E., Del Favero, M., Basilico, F., Briani, F., Benazzi, L., Tortora, P., Mauri, P. and Deho, G. (2006) Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach. Biochimie, 88, 151–161.
- Liu, H., Sadygov, R.G. and Yates, J.R. III (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem., 76, 4193–4201.
- Lill, J. (2003) Proteomic tools for quantitation by mass spectrometry. Mass Spectrom. Rev., 22, 182–194.
- Blonder, J., Conrads, T.P. and Veenstra, T.D. (2004) Characterization and quantitation of membrane proteomes using multidimensional MS-based proteomic technologies. Expert Rev. Proteomics, 1, 153–163.
- Krishna, R.G. and Wold, F. (1993) Post-translational modification of proteins. Adv. Enzymol. Relat. Areas Mol. Biol., 67, 265–298.
- Hubbard, M.J. and Cohen, P. (1993) On target with a new mechanism for the regulation of protein phosphorylation. Trends Biochem. Sci., 18, 172–177.
- Anderson, N.L. and Anderson, N.G. (2002) The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics, 1, 845–867.
- Durr, E., Yu, J., Krasinska, K.M., Carver, L.A., Yates, J.R., Testa, J.E., Oh, P. and Schnitzer, J.E. (2004) Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nat. Biotechnol., 22, 985–992.
- Davis, M.T. and Lee, T.D. (1998) Rapid protein identification using a microscale electrospray LC/MS system on an ion trap mass spectrometer. J. Am. Soc. Mass Spectrom., 9, 194–201.
- Brunet, S., Thibault, P., Gagnon, E., Kearney, P., Bergeron, J.J. and Desjardins, M. (2003) Organelle proteomics: looking at less to see more. Trends Cell Biol., 13, 629–638.
- Froehlich, J.E., Wilkerson, C.G., Ray, W.K., McAndrew, R.S., Osteryoung, K.W., Gage, D.A. and Phinney, B.S. (2003) Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. J. Proteome Res., 2, 413–425.
- Opiteck, G.J., Lewis, K.C., Jorgenson, J.W. and Anderegg, R.J. (1997) Comprehensive on-line LC/LC/MS of proteins. Anal. Chem., 69, 1518–1524.
- Opiteck, G.J., Ramirez, S.M., Jorgenson, J.W. and Moseley, M.A., III (1998) Comprehensive two-dimensional high-performance liquid chromatography for the isolation of overexpressed proteins and proteome mapping. Anal. Biochem., 258, 349–361.
- Washburn, M.P., Koller, A., Oshiro, G., Ulaszek, R.R., Plouffe, D., Deciu, C., Winzeler, E. and Yates, J.R., III (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA, 100, 3107–3112.
- MacCoss, M.J., McDonald, W.H., Saraf, A., Sadygov, R., Clark, J.M., Tasto, J.J., Gould, K.L., Wolters, D., Washburn, M., Weiss, A., Clark, J.I. and Yates, J.R., III (2002) Shotgun identification of protein modifications from protein complexes and lens tissue. Proc. Natl. Acad. Sci. USA, 99, 7900–7905.
- Graumann, J., Dunipace, L.A., Seol, J.H., McDonald, W.H., Yates, J.R., III Wold, B.J. and Deshaies, R.J. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol. Cell. Proteomics, 3, 226–237.
- Sutter Instrument Company, www.sutter.com.
- New Objective, www.newobjective.com.
- Brechbühler, Inc., www.brechbuehler.com.
- Upchurch Scientific, www.upchurch.com.
- Calderone, R.A. (2002) Candida and Candidiasis, ASM Press, Washington, DC.
- Kullberg, B.J. and Oude Lashof, A.M. (2002) Epidemiology of opportunistic invasive mycoses. Eur. J. Med. Res., 7, 183–191.
- Hoyer, L.L. (2001) The ALS gene family of Candida albicans. Trends Microbiol., 9, 176–180.
- Hube, B., Monod, M., Schofield, D.A., Brown, A.J. and Gow, N.A. (1994) Expression of seven members of the gene family encoding secretory aspartyl proteinases in Candida albicans. Mol. Microbiol., 14, 87–99.
- Lo, H.J., Kohler, J.R., Di Domenico, B., Loebenberg, D., Cacciapuoti, A. and Fink, G.R. (1997) Nonfilamentous C. albicans mutants are avirulent. Cell, 90, 939–949.
- Klis, F.M., Boorsma, A. and De Groot, P.W. (2006) Cell wall construction in Saccharomyces cerevisiae. Yeast, 23, 185–202.
- Klis, F.M., de Groot, P. and Hellingwerf, K. (2001) Molecular organization of the cell wall of Candida albicans. Med. Mycol., 39, 1–8.
- Monteoliva, L., Matas, M.L., Gil, C., Nombela, C. and Pla, J. (2002) Large-scale identification of putative exported proteins in Candida albicans by genetic selection. Eukaryot. Cell, 1, 514–525.
- Pitarch, A., Jimenez, A., Nombela, C. and Gil, C. (2006) Decoding serological response to Candida cell wall immunome into novel diagnostic, prognostic, and therapeutic candidates for systemic candidiasis by proteomic and bioinformatic analyses. Mol. Cell. Proteomics, 5, 79–96.
- Rupp, S. (2004) Proteomics on its way to study host-pathogen interaction in Candida albicans. Curr. Opin. Microbiol., 7, 330–335.
- Sohn, K., Schwenk, J., Urban, C., Lechner, J., Schweikert, M. and Rupp, S. (2006) Getting in touch with Candida albicans: the cell wall of a fungal pathogen. Curr. Drug Targets, 7, 505–512.
- Urban, C., Sohn, K., Lottspeich, F., Brunner, H. and Rupp, S. (2003) Identification of cell surface determinants in Candida albicans reveals Tsa1p, a protein differentially localized in the cell. FEBS Lett., 544, 228–235.
- Urban, C., Xiong, X., Sohn, K., Schroppel, K., Brunner, H. and Rupp, S. (2005) The moonlighting protein Tsa1p is implicated in oxidative stress response and in cell wall biogenesis in Candida albicans. Mol. Microbiol., 57, 1318–1341.