Chapter 24
Paleogenetics: Ancient DNA in Anthropology
Frederika A. Kaestle,
Frederika A. Kaestle
Associate Professor Fellow
Indiana University, Bloomington, USA
Search for more papers by this authorFrederika A. Kaestle,
Frederika A. Kaestle
Associate Professor Fellow
Indiana University, Bloomington, USA
Search for more papers by this authorBook Editor(s):Clark Spencer Larsen,
Clark Spencer Larsen
Distinguished Professor Chair Fellow Chair-Elect vice president
The Ohio State University, USA
Search for more papers by this authorSummary
This chapter contains sections titled:
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Introduction
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Background
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Methods
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Applications
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Conclusions
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References
REFERENCES
- Arriaza B. T., Salo, W., Aufderheide, A. C., and Holcomb, T. A. (1995) Pre-Columbian Tuberculosis in Northern Chile: Molecular and Skeletal Evidence. American Journal of Physical Anthropology 98: 37–45.
- Bersaglieri, T., Sabeti, P. C., Patterson, N., Vanderploeg, T., Schaffner, S. F., Drake, J. A., Rhodes, M., Reich, D. E., and Hirschhorn, J. N. (2004) Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene. American Journal of Human Genetics 74: 1111–1120.
- Bolnick, D. W., and Smith, D. G. (2007) Migration and Social Structure among the Hopewell: Evidence from Ancient DNA. American Antiquity 72 (4): 627–664.
- Burger, J., Kirchner, M., Bramanti, B., Haak, W., and Thomas, M. G. (2007) Absence of the Lactase-Persistence-Associated Allele in Early Neolithic Europeans. Proceedings of the National Academy of Sciences, USA 104 (10): 3736–3741.
- Cabana, G., Hunley, K., and Kaestle, F. A. (2008) Population Continuity or Replacement? A Novel Computer Simulation Approach and Its Application to the Numic Expansion (Western Great Basin, USA). American Journal of Physical Anthropology 135 (4): 438–447.
- Cantwell, A.-M., Friedlander, R., and Tramm, M. L. (2000) Ethics and Anthropology: Facing Future Issues in Human Biology, Globalism, and Cultural Property. New York: New York Academy of Sciences.
- De La Cruz, I., González-Oliver, A., Kemp, B. M., Román, J. A., Smith, D. G., and TorreBlanco, A. (2008) Sex Identification of Children Sacrificed to the Ancient Aztec Rain Gods in Tlatelolco. Current Anthropology 49 (3): 519–526.
- Deguilloux, M. F., Moquel, J., Pemonge, M. H., and Colombeau, G. (2009) Ancient DNA Supports Lineage Replacement in European Dog Gene Pool: Insights into Neolithic Southeast France. Journal of Archaeological Science 36: 513–519.
- Germonpré, M., Sablin, M. V., Stevens, R. E., Hedges, R. E. M., Hofreiter, M., Stiller, M., and Després, V. R. (2009) Fossil Dogs and Wolves from Paleolithic Sites in Belgium, the Ukraine and Russia: Osteometry, Ancient DNA and Stable Isotopes. Journal of Archaeological Science 36: 473–490.
- Gobalet K. W. (2001) A Critique of Faunal Analysis: Inconsistency among Experts in Blind Tests. Journal of Archaeological Science 28: 377–386.
- Goldstein, L. G. (1980) Mississippian Mortuary Practices: A Case Study of Two Cemeteries in the Lower Illinois Valley. Evanston: Northwestern University Archaeological Program.
- Götherström A., Fischer, C., Lindén, K., and Lidén, K. (1995) X-raying Ancient Bone: A Destructive Method in Connection with DNA Analysis. Laborativ Arkeologi 8: 26–28.
- Grieshaber, B. M., Osbourne, D. L., Doubleday, A. F., and Kaestle, F. A. (2008) A Pilot Study into the Effects of X-ray and Computed Tomography Exposure on the Amplification of DNA from Bone. Journal of Archaeological Sciences 35 (3): 681–687.
- Hall, R. L. (1997) An Archaeology of the Soul: North American Indian Belief and Ritual. Urbana: University of Illinois Press.
- Higuchi, R., Bowman, B., Freiberger, M., Ryder, A. O., and Wilson, A. C. (1984) DNA Sequence from the Quagga, an Extinct Member of the Horse Family. Nature 312: 282–284.
- Hudson, C. (1976) The Southeastern Indians. Knoxville: University of Tennessee Press.
- Kaestle, F. A., and Horsburgh, K. A. (2002) Ancient DNA in Anthropology: Methods, Applications and Ethics. Yearbook of Physical Anthropology 45: 92–130.
- Kaestle, F. A., and Smith, D. G. (2001) Ancient Native American DNA from Western Nevada: Implications for the Numic Expansion Hypothesis. American Journal of Physical Anthropology 115: 1–12.
- Kaestle, F. A., and Smith, D. G. (2005) Working with Ancient DNA: NAGPRA, Kennewick Man and Other Ancient Peoples. In T. R. Turner (ed.), Biological Anthropology and Ethics (pp. 241–262). Albany NY: State University of New York Press.
- Kemp, B. M., Malhi, R. S., McDonough, J., Bolnick, D. A., Eshleman, J. A., Rickards, O., Martinez-Labarga, C., Johnson, J. R., Lorenz, J. G., Dixon, E. J., Fifield, T. E., Heaton, T. H., Worl, R., and Smith, D. G. (2007) Genetic Analysis of Early Holocene Skeletal Remains from Alaska and Its Implications for the Settlement of the Americas. American Journal of Physical Anthropology 132: 605–621.
- Leonard, J., A., Wayne, R. K., Wheeler, J., Valadez, R., Guillén, S., and Vilá, C. (2002) Ancient DNA Evidence for Old World Origin of New World Dogs. Science 298: 1613–1616.
- Lev, G., Bercovier, H., Brittain, D., and Greenblatt, C. (2001) Spoligotyping of Ancient Tuber-cle Bacilli. Ancient Biomolecules 3: 306.
- Madsen, D. B., and Rhode, D. (1994) Across the West: Human Population Movement and the Expansion of the Numa. Salt Lake City: University of Utah Press.
- Malmström, H., Vilá, C., Gilbert, M. T. P., Stora, J., Willerslev, E., Holmlund, G., and Götherström, A. (2008) Barking Up the Wrong Tree: Modern Northern European Dogs Fail to Explain Their Origin. BMC Evolutionary Biology 8: 71.
- Matisoo-Smith, E., Roberts, R. M., Irwin, G. J., Allen, J. S., Penny, D., and Lambert, D. M. (1998) Patterns of Prehistoric Human Mobility in Polynesia Indicated by mtDNA from the Pacific Rat. Proceedings of the National Academy of Sciences, USA 95: 15145–15150.
- Matisoo-Smith, E., and Robins, J. H. (2004) Origins and Dispersal of Pacific Peoples: Evidence from mtDNA Phylogenies of the Pacific Rate. Proceedings of the National Academy of Sciences, USA 101: 9167–9172.
- Millar, C. D., Huynen, L., Subramanian, S., Mohandesan, E., and Lambert, D. M. (2008) New Developments in Ancient Genomics. Trends in Ecology and Evolution 23 (7): 386–393.
- Morell, V. (1998) Kennewick Man's Trials Continue. Science 280: 190–192.
- Munford, D., Zanini, M. C., and Neves, W. A. (1995) Human Cranial Variation in South America: Implications for the Settlement of the New World. Brazilian Journal of Genetics 18: 673–688.
- NCPHS [National Commission for the Protection of Human Subjects of Biomedical and Behavioral Research] (1979) The Belmont Report: Ethical Principles and Guidelines for the Protection of Human Subjects of Research. OPRR Reports (April) 18: 1–8.
- Pääbo, S. (1993) Ancient DNA. Scientific American (Nov.) 269 (5): 86–92.
- Poinar H. N., Kuch, M., Sobolik, K. D., Barnes, I., Stankiewicz, A. B., Kuder, T., Spaulding, W. G., Bryant, V. M., Cooper, A., and Pääbo, S. (2001) A Molecular Analysis of Dietary Diversity for Three Archaic Native Americans. Proceedings of the National Academy of Sciences, USA 98 (8): 4317–4322.
- Raff, J. A. (2008) An Ancient DNA Perspective on the Prehistory of the Lower Illinois Valley. PhD dissertation, Indiana University, Bloomington.
- Raff, J. A., Cook, D. C., Bolnick, D., and Kaestle, F. A. (n.d.a) Prehistoric Tuberculosis in the Midwest. Department of Anthropology, Indiana University, Bloomington (unpublished MS).
- Raff, J., Cook, D., and Kaestle, F. (2006) Tuberculosis in the New World: A Study of Ribs from the Schild Mississippian Population, West-Central Illinois. Memórias do Instituto Oswaldo Cruz 101 (Suppl. 2): 25–27.
- Raff, J., Cook, D., and Kaestle, F. (n.d.b) Testing the Madonna and Child Trope. Department of Anthropology, Indiana University, Bloomington (unpublished MS).
- Raff, J. A., Cook, D. C., Spencer, S. D., and Kaestle, F. A. (n.d.c) Mortuary Practices at Schild: Ancient DNA Evidence. Department of Anthropology, Indiana University, Bloomington (unpublished MS).
- Roberts, C. A., and Buikstra, J. E. (2003) The Bioarchaeology of Tuberculosis: A Global View on a Reemerging Disease. Gainesville: University Press of Florida.
- Schlumbaum A., Tensen, M., and Jaenicke-Després, V. (2008) Ancient Plant DNA in Archaeo-botany. Vegetation History and Archaeobotany 17 (2): 233–244.
- Shook, B. A. S., and Smith, D. G. (2008) Using Ancient mtDNA to Reconstruct the Population History of Northeastern North America. American Journal of Physical Anthropology 137: 14–29.
- Smith, D. G., Malhi, R. S., Eshleman, J. A., and Kaestle. F. A. (2006) Mitochondrial DNA Haplogroups of Paleoamericans in North America. In R. Bonnichsen, B. Lepper, D. G. Steele, D. Stanford, C. N. Warren, and R. Gruhn (eds), PaleoAmerican Origins: Moving Beyond Clovis (pp. 243–254). College Station TX: Texas A&M University Press.
- Spigelman, M., Matheson, C., Lev, G., Greenblatt, C., and Donoghue, H. D. (2002) Confirmation of the Presence of Mycobacterium Tuberculosis Complex-Specific DNA in Three Archaeological Specimens. International Journal of Osteoarchaeology 12: 393–401.
- Steele, D. G., and Powell, J. F. (1992) Peopling of the Americas: Paleobiological Evidence. Human Biology 64 (3): 303–336.
-
Stone, A. C. (2008) DNA Analysis of Archaeological Remains. In M. A. Katzenberg and S. R. Saunders (eds), Biological Anthropology of the Human Skeleton, 2nd edn (pp. 461–483). Hoboken: John Wiley and Sons, Inc.
10.1002/9780470245842.ch15 Google Scholar
- Stone, A. C., and Stoneking, M. (1998) MtDNA Analysis of a Prehistoric Oneota Population: Implications for the Peopling of the New World. American Journal of Human Genetics 62: 1153–1170.
- Storey, A. A., Quiroz, D., Ramírez, J. M., Beavan-Athfield, N., Addison, D. J., Walter, R., Hunt, T., Athens, J. S., Huynen, L., and Matisoo-Smith, E. A. (2008) Pre-Columbian Chickens, Dates, Isotopes and mtDNA. Proceedings of the National Academy of Sciences, USA 105 (48): E99.
- Storey, A. A., Ramírez, J. M., Guiroz, D., Burley, D. V., Addison, D. J., Walter, R., Anderson, A. J., Hunt, T. L., Athens, J. S., Huynen, L., and Matisoo-Smith, E. A. (2007) Radiocarbon and DNA Evidence for a Pre-Columbian Introduction of Polynesian Chickens to Chile. Proceedings of the National Academy of Sciences, USA 104 (25): 10335–10339.
- Tito, R. Y., Macmil, S., Wiley, G., Najar, F., Cleeland, L., Qu, C., Wang, P., Romagne, F., Leonard, S., Ruiz, A. J., Reinhard, K., Roe, B. A., and Lewis, C. M. (2008) Phylotyping and Functional Analysis of Two Ancient Human Microbiomes. PLoS One 3 (11): e3703.
- Verginelli, F., Capelli, C., Coia, V., Musiani, M., Falchetti, M., Ottini, L., Palmirotta, R., Tagliacozzo, A., De Rossi Mazzorin, I., and Mariani-Costantini, R. (2005) Mitochondrial DNA from Prehistoric Canids Highlights Relationships between Dogs and South-East European Wolves. Molecular Biology and Evolution 22 (12): 2541–2551.
- Vitelli, K. D. (1996) Archaeological Ethics. Walnut Creek CA: Altamira Press.
- Watkins J., Goldstein, L., Vitelli, K. D., and Jenkins, L. (2000) Accountability: Responsibilities of Archaeologists to Other Interest Groups. In M. J. Lynott and A. Wylie (eds), Ethics in American Archaeology, 2nd edn (pp. 40–44). Kansas: Allen Press.
- Willerslev, E., Hansen, A. J., Binladen, J., Brand, T. B., Gilbert, M. T. P., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, D. C., and Cooper, A. (2003) Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments. Science 300 (5620): 791–795.