Burkholderia †,‡
Peter Vandamme
Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
Search for more papers by this authorLeo Eberl
Department of Plant and Microbial Biology, University Zürich, Zürich, Switzerland
Search for more papers by this authorPeter Vandamme
Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
Search for more papers by this authorLeo Eberl
Department of Plant and Microbial Biology, University Zürich, Zürich, Switzerland
Search for more papers by this authorAbstract
Burk.hol.de'ri.a. N.L. fem. n. Burkholderia named after W. H. Burkholder, American bacteriologist who discovered the etiological agent of onion rot.
Proteobacteria / Betaproteobacteria / Burkholderiales / Burkholderiaceae / Burkholderia
The genus Burkholderia now groups more than 100 species with extraordinary metabolic capacities, and which occupy a bewildering array of ecological niches. The sources from which Burkholderia species have been isolated are manifold, but the accumulated evidence suggests that soil, where Burkholderia can be associated with a wide range of plants and fungi, is its natural habitat. The genus comprises two class-3 pathogens, Burkholderia mallei and Burkholderia pseudomallei, but a growing number of Burkholderia species has been reported as opportunistic pathogens in humans. Burkholderia bacteria appear to have a predilection for the respiratory tract as life-threatening lung infections occur in individuals with cystic fibrosis or chronic granulomatous disease, and in patients requiring mechanical ventilation.
Burkholderia bacteria have rightfully been referred to as both friend and foe to humans. While the first Burkholderia species were primarily known as plant, human, and animal pathogens, subsequent studies revealed their biotechnological potential for plant growth promotion, biocontrol of various plant pests, and bioremediation. Because of this wide interest, an unusual number of whole-genome sequences has become available, yet generally failed to reveal the difference between good or bad, or alternatively, biotechnologically safe or unsafe, species or strains. The phylogenetic diversity within this genus was recently used as an argument to reclassify the large majority of Burkholderia species into Burkholderia sensu stricto and the novel genera Caballeronia, Paraburkholderia, and Robbsia. Except for the latter, each of genera consists of environmental species of which a growing number is reported to cause infections in humans.
DNA G + C content (mol%): 64–69.
Type species: Burkholderia cepacia (Palleroni and Holmes 1981) Yabuuchi, Kosako, Oyaizu, Yano, Hotta, Hashimoto, Ezaki and Arakawa 1993, 398VP (Effective publication: Yabuuchi, Kosako, Oyaizu, Yano, Hotta, Hashimoto, Ezaki and Arakawa 1992, 1271) (Pseudomonas cepacia Palleroni and Holmes 1981, 479).
References
- Aaron SD, Ferris W, Henry DA, Speert DP, & Macdonald NE (2000) Multiple combination bactericidal antibiotic testing for patients with cystic fibrosis infected with Burkholderia cepacia . Am J Respir Crit Care Med 161 (4 Pt 1): 1206–1212.
- Agnoli K, Schwager S, Uehlinger S, Vergunst A, Viteri DF, Nguyen DT et al. (2012) Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid. Mol Microbiol 83 (2): 362–378.
- Agnoli K, Frauenknecht C, Freitag R, Schwager S, Jenul C, Vergunst A et al. (2014) The third replicon of members of the Burkholderia cepacia complex, plasmid pC3, plays a role in stress tolerance. Appl Environ Microbiol 80 (4): 1340–1348.
- Akita H, Kimura Z, Yusoff MZM, Nakashima N, & Hoshino T (2016) Isolation and characterization of Burkholderia sp. strain CCA53 exhibiting ligninolytic potential. Springerplus 5: 596.
- Alexander BD, Petzold EW, Reller LB, Palmer SM, Davis RD, Woods CW et al. (2008) Survival after lung transplantation of cystic fibrosis patients infected with Burkholderia cepacia complex. Am J Transplant 8 (5): 1025–1030.
- Aris RM, Routh JC, LiPuma JJ, Heath DG, & Gilligan PH (2001) Lung transplantation for cystic fibrosis patients with Burkholderia cepacia complex. Survival linked to genomovar type. Am J Respir Crit Care Med 164 (11): 2102–2106.
-
Azegami K, Nishiyama K, Watanabe Y, Kadota I, Ohuchi A, & Fukazawa C (1987)
Pseudomonas plantarii sp. nov., the causal agent of rice seedling blight. Int J Syst Bacteriol
37 (2): 144–152.
10.1099/00207713-37-2-144 Google Scholar
- Bader NE & Cheng WX (2007) Rhizosphere priming effect of Populus fremontii obscures the temperature sensitivity of soil organic carbon respiration. Soil Biol Biochem 39 (2): 600–606.
- Balandreau J, Viallard V, Cournoyer B, Coenye T, Laevens S, & Vandamme P (2001) Burkholderia cepacia genomovar III is a common plant-associated bacterium. Appl Environ Microbiol 67 (2): 982–985.
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR et al. (2005) Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43 (9): 4665–4673.
- Baldwin A, Mahenthiralingam E, Drevinek P, Vandamme P, Govan JR, Waine DJ et al. (2007) Environmental Burkholderia cepacia complex isolates in human infections. Emerg Infect Dis 13 (3): 458–461.
- Baldwin A, Mahenthiralingam E, Drevinek P, Pope C, Waine DJ, Henry DA et al. (2008) Elucidating global epidemiology of Burkholderia multivorans in cases of cystic fibrosis by multilocus sequence typing. J Clin Microbiol 46 (1): 290–295.
- Ballard RW, Palleroni NJ, Doudoroff M, Stanier RY, & Mandel M (1970) Taxonomy of aerobic pseudomonads — Pseudomonas cepacia, Pseudomonas marginata, Pseudomonas alliicola and Pseudomonas caryophylli . J Gen Microbiol 60: 199–214.
- Beckman W & Lessie TG (1979) Response of Pseudomonas cepacia to beta-lactam antibiotics - utilization of penicillin G as the carbon source. J Bacteriol 140 (3): 1126–1128.
- Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E et al. (2017) Genome data provides high support for generic boundaries in Burkholderia sensu lato . Front Microbiol 8: 1154.
- Bevivino A, Tabacchioni S, Chiarini L, Carusi MV, Delgallo M, & Visca P (1994) Phenotypic comparison between rhizosphere and clinical isolates of Burkholderia cepacia . Microbiology 140: 1069–1077.
- Bharti P, Anand V, Chander J, Singh IP, Singh TV, & Tewari R (2012) Heat stable antimicrobial activity of Burkholderia gladioli OR1 against clinical drug resistant isolates. Indian J Med Res 135 (5): 666–671.
- Biggins JB, Liu XF, Feng ZY, & Brady SF (2011) Metabolites from the induced expression of cryptic single operons found in the genome of Burkholderia pseudomallei . J Am Chem Soc 133 (6): 1638–1641.
- Biggins JB, Ternei MA, & Brady SF (2012) Malleilactone, a polyketide synthase-derived virulence factor encoded by the cryptic secondary metabolome of Burkholderia pseudomallei group pathogens. J Am Chem Soc 134 (32): 13192–13195.
- Biggins JB, Kang HS, Ternei MA, DeShazer D, & Brady SF (2014) The chemical arsenal of Burkholderia pseudomallei is essential for pathogenicity. J Am Chem Soc 136 (26): 9484–9490.
- Bisacchi GS, Hockstein DR, Koster WH, Parker WL, Rathnum ML, & Unger SE (1987) Xylocandin — a new complex of antifungal peptides .2. structural studies and chemical modifications. J Antibiot 40 (11): 1520–1529.
- Blackburn L, Brownlee K, Conway S, & Denton M (2004) ‘Cepacia syndrome’ with Burkholderia multivorans, 9 years after initial colonization. J Cyst Fibros 3 (2): 133–134.
-
Brejda JJ, Kremer RJ, & Brown JR (1994) Indications of associative nitrogen-fixation in eastern gamagrass. J Range Manag
47 (3): 192–195.
10.2307/4003014 Google Scholar
- Brett PJ, DeShazer D, & Woods DE (1998) Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species. Int J Syst Bacteriol 48: 317–320.
- Brisse S, Stefani S, Verhoef J, Van Belkum A, Vandamme P, & Goessens W (2002) Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex. J Clin Microbiol 40 (5): 1743–1748.
- Burkholder WH (1950) Sour skin, a bacterial rot of onion bulbs. Phytopathology 40: 115.
- Burkhead KD, Schisler DA, & Slininger PJ (1994) Pyrrolnitrin production by biological-control agent Pseudomonas-cepacia B37W in culture and in colonized wounds of potatoes. Appl Environ Microbiol 60 (6): 2031–2039.
- Butler SL, Doherty CJ, Hughes JE, Nelson JW, & Govan JRW (1995) Burkholderia cepacia and cystic-fibrosis — do natural environments present a potential hazard? J Clin Microbiol 33 (4): 1001–1004.
- Carlier AL & Eberl L (2012) The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host. Environ Microbiol 14 (10): 2757–2769.
- Carlier A, Fehr L, Pinto-Carbo M, Schaberle T, Reher R, Dessein S et al. (2016) The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environ Microbiol 18 (8): 2507–2522.
- Cartwright DK, Chilton WS, & Benson DM (1995) Pyrrolnitrin and phenazine production by Pseudomonas cepacia, strain 5.5b, a biocontrol agent of Rhizoctonia solani . Appl Microbiol Biotechnol 43 (2): 211–216.
- Cescutti P, Impallomeni G, Garozzo D, Sturiale L, Herasimenka Y, Lagatolla C et al. (2003) Exopolysaccharides produced by a clinical strain of Burkholderia cepacia isolated from a cystic fibrosis patient. Carbohydr Res 338 (23): 2687–2695.
- Cheng AC & Currie BJ (2005) Melioidosis: epidemiology, pathophysiology, and management. Clin Microbiol Rev 18 (2): 383–416.
- Cihlar RL, Lessie TG, & Holt SC (1978) Characterization of bacteriophage CP1, an organic-solvent sensitive phage associated with Pseudomonas cepacia . Can J Microbiol 24 (11): 1404–1412.
- Cimermancic P, Medema MH, Claesen J, Kurita K, Brown LCW, Mavrommatis K et al. (2014) Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell 158 (2): 412–421.
- Clode FE, Metherell LA, & Pitt TL (1999) Nosocomial acquisition of Burkholderia gladioli in patients with cystic fibrosis. Am J Respir Crit Care Med 160 (1): 374–375.
- Clode FE, Kaufmann ME, Malnick H, & Pitt TL (2000) Distribution of genes encoding putative transmissibility factors among epidemic and nonepidemic strains of Burkholderia cepacia from cystic fibrosis patients in the United Kingdom. J Clin Microbiol 38 (5): 1763–1766.
- Coenye T, Gillis M & Vandamme P (2000) Pseudomonas antimicrobica Attafuah and Bradbury 1990 is a junior synonym of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993. Int J Syst Evol Microbiol 50: 2135–2139.
- Coenye T & LiPuma JJ (2003) Molecular epidemiology of Burkholderia species. Front Biosci 8: E55–E67.
- Coenye T & Mahenthiralingam E (2014) Burkholderia: From Genomes to Function. Horizon Scientific Press, Norwich.
- Coenye T & Vandamme P (2007) Burkholderia: Molecular Biology and Genomics. Horizon Scientific Press, Norwich.
- Coenye T, Holmes B, Kersters K, Govan JRW, & Vandamme P (1999) Burkholderia cocovenenans (van Damme et al. 1960) Gillis et al., 1995 and Burkholderia vandii Urakami et al. 1994 are junior synonyms of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993 and Burkholderia plantarii (Azegami et al. 1987) Urakami et al 1994 respectively. Int J Syst Bacteriol 49: 37–42.
- Coenye T, LiPuma JJ, Henry D, Hoste B, Vandemeulebroecke K, Gillis M et al. (2001a) Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients. Int J Syst Evol Microbiol 51: 271–279.
- Coenye T, Mahenthiralingam E, Henry D, LiPuma JJ, Laevens S, Gillis M et al. (2001b) Burkholderia ambifaria sp nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates. Int J Syst Evol Microbiol 51: 1481–1490.
- Coenye T, Vandamme P, Govan JRW, & Lipuma JJ (2001c) Taxonomy and identification of the Burkholderia cepacia complex. J Clin Microbiol 39 (10): 3427–3436.
- Compant S, Nowak J, Coenye T, Clement C, & Barka EA (2008) Diversity and occurrence of Burkholderia spp. in the natural environment. FEMS Microbiol Rev 32 (4): 607–626.
- Cooper VS, Vohr SH, Wrocklage SC, & Hatcher PJ (2010) Why genes evolve faster on secondary chromosomes in bacteria. PLoS Comput Biol 6 (4): e1000732.
- Cordova-Kreylos AL, Fernandez LE, Koivunen M, Yang A, Flor-Weiler L, & Marrone PG (2013) Isolation and characterization of Burkholderia rinojensis sp nov., a non-Burkholderia cepacia complex soil bacterium with insecticidal and miticidal activities. Appl Environ Microbiol 79 (24): 7669–7678.
- Currie BJ (2015) Melioidosis: evolving concepts in epidemiology, pathogenesis, and treatment. Semin Respir Crit Care Med 36 (1): 111–125.
- Currie BJ & Jacups SP (2003) Intensity of rainfall and severity of melioidosis, Australia. Emerg Infect Dis 9 (12): 1538–1542.
- Currie BJ, Gal D, Mayo M, Ward L, Godoy D, Spratt BG et al. (2007) Using BOX-PCR to exclude a clonal outbreak of melioidosis. BMC Infect Dis 7: 68.
- Currie BJ, Haslem A, Pearson T, Hornstra H, Leadem B, Mayo M et al. (2009) Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Emerg Infect Dis 15 (2): 169–174.
- Cuzzi B, Herasimenka Y, Silipo A, Lanzetta R, Liut G, Rizzo R et al. (2014) Versatility of the Burkholderia cepacia complex for the biosynthesis of exopolysaccharides: a comparative structural investigation. PLoS One 9 (4): e9437.
- Dagan T & Martin W (2006) The tree of one percent. Genome Biol 7 (10): 118.
- De Smet B, Mayo M, Peeters C, Zlosnik JEA, Spilker T, Hird TJ et al. (2015) Burkholderia stagnalis sp nov and Burkholderia territorii sp nov., two novel Burkholderia cepacia complex species from environmental and human sources. Int J Syst Evol Microbiol 65: 2265–2271.
- De Soyza A, McDowell A, Archer L, Dark JH, Elborn SJ, Mahenthiralingam E et al. (2001) Burkholderia cepacia complex genomovars and pulmonary transplantation outcomes in patients with cystic fibrosis. Lancet 358: 1780–1781.
- De Soyza A, Silipo A, Lanzetta R, Govan JR, & Molinaro A (2008) Chemical and biological features of Burkholderia cepacia complex lipopolysaccharides. Innate Immun 14 (3): 127–144.
-
De Vos P & De Ley J (1983) Intra- and intergeneric similarities of Pseudomonas and Xanthomonas ribosomal ribonucleic acid cistrons. Int J Syst Bacteriol
33 (3): 487–509.
10.1099/00207713-33-3-487 Google Scholar
- Degand N, Carbonnelle E, Dauphin B, Beretti JL, Le Bourgeois M, Sermet-Gaudelus I et al. (2008) Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patients. J Clin Microbiol 46 (10): 3361–3367.
- Depoorter E, Bull MJ, Peeters C, Coenye T, Vandamme P, & Mahenthiralingam E (2016) Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers. Appl Microbiol Biotechnol 100 (12): 5215–5229.
- DiCello F, Bevivino A, Chiarini L, Fani R, Paffetti D, Tabacchioni S et al. (1997) Biodiversity of a Burkholderia cepacia population isolated from the maize rhizosphere at different plant growth stages. Appl Environ Microbiol 63 (11): 4485–4493.
- Dobritsa AP & Samadpour M (2016) Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov to accommodate twelve species of the genera Burkholderia and Paraburkholderia . Int J Syst Evol Microbiol 66: 2836–2846.
- Dobritsa AP, Linardopoulou EV, & Samadpour M (2017) Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov. Int J Syst Evol Microbiol 67 (10): 3846–3853.
- Du WL, Dubarry N, Passot FM, Kamgoue A, Murray H, Lane D et al. (2016) Orderly replication and segregation of the four replicons of Burkholderia cenocepacia J2315. PLoS Genet 12 (7): e1006172.
- Dudler R (2014) The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends Microbiol 22 (1): 28–35.
- Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 (5): 1792–1797.
- El-Banna N & Winkelmann G (1998) Pyrrolnitrin from Burkholderia cepacia: antibiotic activity against fungi and novel activities against streptomycetes. J Appl Microbiol 85 (1): 69–78.
- Estrada-De los Santos P, Bustillos-Cristales R, & Caballero-Mellado J (2001) Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographic distribution. Appl Environ Microbiol 67 (6): 2790–2798.
- Estrada-De los Santos P, Vinuesa P, Martinez-Aguilar L, Hirsch AM, & Caballero-Mellado J (2013) Phylogenetic analysis of Burkholderia species by multilocus sequence analysis. Curr Microbiol 67 (1): 51–60.
- Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M et al. (2011) The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia . Mol Microbiol 82 (2): 327–341.
- Fazli M, McCarthy Y, Givskov M, Ryan RP, & Tolker-Nielsen T (2013) The exopolysaccharide gene cluster Bcam1330-Bcam1341 is involved in Burkholderia cenocepacia biofilm formation, and its expression is regulated by c-di-GMP and Bcam1349. Microbiologyopen 2 (1): 105–122.
- Fazli M, Rybtke M, Steiner E, Weidel E, Berthelsen J, Groizeleau J et al. (2017) Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. Microbiologyopen. doi: 10.1002/mbo3.480
- Fehlberg LCC, Andrade LHS, Assis DM, Pereira RHV, Gales AC, & Marques EA (2013) Performance of MALDI-TOF MS for species identification of Burkholderia cepacia complex clinical isolates. Diagn Microbiol Infect Dis 77 (2): 126–128.
- Fiore A, Laevens S, Bevivino A, Dalmastri C, Tabacchioni S, Vandamme P et al. (2001) Burkholderia cepacia complex: distribution of genomovars among isolates from the maize rhizosphere in Italy. Environ Microbiol 3 (2): 137–143.
- Franke J, Ishida K, & Hertweck C (2012) Genomics-driven discovery of Burkholderic acid, a noncanonical, cryptic polyketide from human pathogenic Burkholderia species. Angew Chem Int Ed 51 (46): 11611–11615.
- Fu SL & Cheng WX (2002) Rhizosphere priming effects on the decomposition of soil organic matter in C-4 and C-3 grassland soils. Plant Soil 238 (2): 289–294.
- Gatedee J, Kritsiriwuthinan K, Galyov EE, Shan JY, Dubinina E, Intarak N et al. (2011) Isolation and characterization of a novel podovirus which infects Burkholderia pseudomallei . Virol J 8: 366.
- Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC et al. (2011) Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia . J Bacteriol 193 (19): 5300–5313.
- Gilligan PH (1991) Microbiology of airway disease in patients with cystic fibrosis. Clin Microbiol Rev 4 (1): 35–51.
- Gillis M, Van TV, Bardin R, Goor M, Hebbar P, Willems A et al. (1995) Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam. Int J Syst Bacteriol 45 (2): 274–289.
- Glass MB, Gee JE, Steigerwalt AG, Cavuoti D, Barton T, Hardy RD et al. (2006a) Pneumonia and septicemia caused by Burkholderia thailandensis in the United States. J Clin Microbiol 44 (12): 4601–4604.
- Glass MB, Steigerwalt AG, Jordan JG, Wilkins PP, & Gee JE (2006b) Burkholderia oklahomensis sp. nov., a Burkholderia pseudomallei-like species formerly known as the Oklahoma strain of Pseudomonas pseudomallei . Int J Syst Evol Microbiol 56: 2171–2176.
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R et al. (2003) Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei . J Clin Microbiol 41 (5): 2068–2079.
- Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK et al. (2011) Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol 2: 94.
- Goldstein R, Sun L, Jiang RZ, Sajjan U, Forstner JF, & Campanelli C (1995) Structurally variant classes of pilus appendage fibers coexpressed from Burkholderia (Pseudomonas) cepacia . J Bacteriol 177 (4): 1039–1052.
- Gonyar LA, Fankhauser SC, & Goldberg JB (2015) Single amino acid substitution in homogentisate 1,2-dioxygenase is responsible for pigmentation in a subset of Burkholderia cepacia complex isolates. Environ Microbiol Rep 7 (2): 180–187.
- Gonzalez CF & Vidaver AK (1979) Bacteriocin, plasmid and pectolytic diversity in Pseudomonas cepacia of clinical and plant origin. J Gen Microbiol 110 ( Jan): 161–170.
- Gonzalez I, Grant KA, Richardson PT, Park SF, & Collins MD (1997) Specific identification of the enteropathogens Campylobacter jejuni and Campylobacter coli by using a PCR test based on the ceuE gene encoding a putative virulence determinant. J Clin Microbiol 35 (3): 759–763.
- Goudie AD, Lynch KH, Seed KD, Stothard P, Shrivastava S, Wishart DS et al. (2008) Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex. BMC Genomics 9: 615.
- Govan JRW & Harris G (1985) Typing of Pseudomonas cepacia by bacteriocin susceptibility and production. J Clin Microbiol 22 (4): 490–494.
- Govindarajan M, Balandreau J, Muthukumarasamy R, Revathi G, & Lakshminarasimhan C (2006) Improved yield of micropropagated sugarcane following inoculation by endophytic Burkholderia vietnamiensis . Plant Soil 280 (1–2): 239–252.
- Groenhagen U, Baumgartner R, Bailly A, Gardiner A, Eberl L, Schulz S et al. (2013) Production of bioactive volatiles by different Burkholderia ambifaria strains. J Chem Ecol 39 (10): 1343–1345.
- Groll M, Schellenberg B, Bachmann AS, Archer CR, Huber R, Powell TK et al. (2008) A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanism. Nature 452 (7188): 755–758.
- Guentas L, Gensous S, Cavaloc Y, Ducousso M, Amir H, De Georges de Ledenon BD et al. (2016) Burkholderia novacaledonica sp nov and B. ultramafica sp nov isolated from roots of Costularia spp. pioneer plants of ultramafic soils in New Caledonia. Syst Appl Microbiol 39 (3): 151–159.
- Gwynn MN, Box SJ, Brown AG, & Gilpin ML (1988) MM-42842, a new member of the monobactam family produced by Pseudomonas cocovenenans .1. Identification of the producing organism. J Antibiot 41 (1): 1–6.
- Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C et al. (2011) Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Mol Plant-Microbe Interact 24 (11): 1276–1288.
- Hallmann J, Rodriguez-Kabana R, & Kloepper JW (1999) Chitin-mediated changes in bacterial communities of the soil, rhizosphere and within roots of cotton in relation to nematode control. Soil Biol Biochem 31 (4): 551–560.
- Ham JH, Melanson RA, & Rush MC (2011) Burkholderia glumae: next major pathogen of rice? Mol Plant Pathol 12 (4): 329–339.
- Hancock RE (1998) Resistance mechanisms in Pseudomonas aeruginosa and other nonfermentative Gram-negative bacteria. Clin Infect Dis 27 (Suppl 1): S93–S99.
- Haynes WC, & Burkholder WH (1957) Genus I Pseudomonas . In Bergey's Manual of Determinative Bacteriology, 7th ed., vol. 1, Breed Murray, Smith (eds). The Williams & Wilkins Co., Baltimore; pp 89–152.
- Hebbar KP, Davey AG, Merrin J, McLoughlin TJ, & Dart PJ (1992) Pseudomonas-cepacia, a potential suppressor of maize soil-borne diseases - seed inoculation and maize root colonization. Soil Biol Biochem 24 (10): 999–1007.
- Heidt A, Monteil H, & Richard C (1983) O and H serotyping of Pseudomonas cepacia . J Clin Microbiol 18 (3): 738–740.
- Heine HS, England MJ, Waag DM, & Byrne WR (2001) In vitro antibiotic susceptibilities of Burkholderia mallei (causative agent of glanders) determined by broth microdilution and E-test. Antimicrob Agents Chemother 45 (7): 2119–2121.
- Henry D, Campbell M, McGimpsey C, Clarke A, Louden L, Burns JL et al. (1999) Comparison of isolation media for recovery of Burkholderia cepacia complex from respiratory secretions of patients with cystic fibrosis. J Clin Microbiol 37 (4): 1004–1007.
- Henry DA, Mahenthiralingam E, Vandamme P, Coenye T, & Speert DP (2001) Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex. J Clin Microbiol 39 (3): 1073–1078.
- Herasimenka Y, Cescutti P, Impallomeni G, Campana S, Taccetti G, Ravenni N et al. (2007) Exopolysaccharides produced by clinical strains belonging to the Burkholderia cepacia complex. J Cyst Fibros 6 (2): 145–152.
-
Hildebrand DC, Palleroni NJ, & Doudoroff M (1973) Synonymy of Pseudomonas gladioli Severini 1913 and Pseudomonas marginata (Mcculloch 1921) Stapp 1928. Int J Syst Bacteriol
23 (4): 433–437.
10.1099/00207713-23-4-433 Google Scholar
- Holden MTG, Seth-Smith HMB, Crossman LC, Sebaihia M, Bentley SD, Cerdeno-Tarraga AM et al. (2009) The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol 191 (1): 261–277.
- Howard K & Inglis TJJ (2003) Novel selective medium for isolation of Burkholderia pseudomallei . J Clin Microbiol 41 (7): 3312–3316.
- Huber B, Riedel K, Kothe M, Givskov M, Molin S, & Eberl L (2002) Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111. Mol Microbiol 46 (2): 411–426.
- Hwang J, Chilton WS, & Benson DM (2002) Pyrrolnitrin production by Burkholderia cepacia and biocontrol of Rhizoctonia stem rot of poinsettia. Biol Control 25 (1): 56–63.
- Ierano T, Silipo A, Sturiale L, Garozzo D, Brookes H, Khan CMA et al. (2008) The structure and proinflammatory activity of the lipopolysaccharide from Burkholderia multivorans and the differences between clonal strains colonizing pre and posttransplanted lungs. Glycobiology 18 (11): 871–881.
- Imanaka H, Kousaka M, Tamura G, & Arima K (1965) Studies on pyrrolnitrin a new antibiotic .2. taxonomic studies on pyrrolnitrin-producing strain. J Antibiot 18 (5): 205–206.
- Inhulsen S, Aguilar C, Schmid N, Suppiger A, Riedel K, & Eberl L (2012) Identification of functions linking quorum sensing with biofilm formation in Burkholderia cenocepacia H111. Microbiologyopen 1 (2): 225–242.
- Jacobs JL, Fasi AC, Ramette A, Smith JJ, Hammerschmidt R, & Sundin GW (2008) Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil. Appl Environ Microbiol 74 (10): 3121–3129.
- Jeong Y, Kim J, Kim S, Kang Y, Nagamatsu T, & Hwang I (2003) Toxoflavin produced by Burkholderia glumae causing rice grain rot is responsible for inducing bacterial wilt in many field crops. Plant Dis 87 (8): 890–895.
- Jiao Y, Yoshihara T, Ishikuri S, Uchino H, & Ichihara A (1996) Structural identification of cepaciamide A, a novel fungitoxic compound from Pseudomonas cepacia D-202. Tetrahedron Lett 37 (7): 1039–1042.
- Jiao ZQ, Kawamura Y, Mishima N, Yang RF, Li N, Liu XM et al. (2003) Need to differentiate lethal toxin-producing strains of Burkholderia gladioli, which cause severe food poisoning: description of B. gladioli pathovar cocovenenans and an emended description of B. gladioli . Microbiol Immunol 47 (12): 915–925.
- Jimenez L & Smalls S (2000) Molecular detection of Burkholderia cepacia in toiletry, cosmetic, and pharmaceutical raw materials and finished products. J AOAC Int 83: 963–966.
- Jin ZM, Sha W, Zhang YF, Zhao J, & Ji HY (2013) Isolation of Burkholderia cepacia JB12 from lead- and cadmium-contaminated soil and its potential in promoting phytoremediation with tall fescue and red clover. Can J Microbiol 59 (7): 449–455.
- Johnston-Monje D & Raizada MN (2011) Conservation and diversity of seed associated endophytes in Zea across boundaries of evolution, ethnography and ecology. PLoS One 6 (6): e20396.
- Jolley KA & Maiden MCJ (2010) BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11: 595.
- Kanaphun P, Thirawattanasuk N, Suputtamongkol Y, Naigowit P, Dance DA, Smith MD et al. (1993) Serology and carriage of Pseudomonas pseudomallei: a prospective study in 1000 hospitalized children in northeast Thailand. J Infect Dis 167 (1): 230–233.
- Karki HS, Shrestha BK, Han JW, Groth DE, Barphagha IK, Rush MC et al. (2012) Diversities in virulence, antifungal activity, pigmentation and DNA fingerprint among strains of Burkholderia glumae . PLoS One 7 (9): e45376.
- Kawamoto SO & Lorbeer JW (1974) Infection of onion leaves by Pseudomonas cepacia . Phytopathology 64 (11): 1440–1445.
- Kayser WV, Hickman KCD, Bond WW, Favero MS, & Carson LA (1975) Bacteriological evaluation of an ultra-pure water-distilling system. Appl Microbiol 30 (4): 704–706.
- Keith LM, Sewake KT, & Zee FT (2005) Isolation and characterization of Burkholderia gladioli from orchids in Hawaii. Plant Dis 89 (12): 1273–1278.
- Kenna DT, Barcus VA, Langley RJ, Vandamme P, & Govan JR (2003) Lack of correlation between O-serotype, bacteriophage susceptibility and genomovar status in the Burkholderia cepacia complex. FEMS Immunol Med Microbiol 35 (2): 87–92.
- Kenny DJ, Russell P, Rogers D, Eley SM, & Titball RW (1999) In vitro susceptibilities of Burkholderia mallei in comparison to those of other pathogenic Burkholderia spp. Antimicrob Agents Chemother 43 (11): 2773–2775.
- Kersters K, Ludwig W, Vancanneyt M, DeVos P, Gillis M, & Schleifer KH (1996) Recent changes in the classification of the pseudomonads: an overview. Syst Appl Microbiol 19 (4): 465–477.
- Khan A, Asif H, Studholme DJ, Khan IA, & Azim MK (2013) Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards. World J Microbiol Biotechnol 29 (11): 2033–2044.
- Kirinuki T, Ichiba T, & Katayama K (1984) Mode of action of altericidins .1. General survey of action site of altericidins on metabolism of Alternaria kikuchiana and Ustilago maydis . J Pestic Sci 9 (4): 601–610.
- Kiska DL, Kerr A, Jones M, Caracciolo JA, Eskridge B, Jordan M et al. (1996) Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. J Clin Microbiol 34 (4): 886–891.
- Knappe TA, Linne U, Zirah S, Rebuffat S, Xie XL, & Marahiel MA (2008) Isolation and structural characterization of capistruin, a lasso peptide predicted from the genome sequence of Burkholderia thailandensis E264. J Am Chem Soc 130 (34): 11446–11454.
- Koenig DW & Pierson DL (1997) Microbiology of the space shuttle water system. Water Sci Technol 35 (11–12): 59–64.
- Kurita T & Tabei H (1967) On the pathogenic bacterium of bacterial grain rot of rice. Ann Phytopathol Soc Jpn 33: 111.
- Kvitko BH, Goodyear A, Propst KL, Dow SW, & Schweizer HP (2012) Burkholderia pseudomallei known siderophores and hemin uptake are dispensable for lethal murine melioidosis. PLoS Negl Trop Dis 6 (6): e1715.
- Langley R, Kenna DT, Vandamme P, Ure R, & Govan JRW (2003) Lysogeny and bacteriophage host range within the Burkholderia cepacia complex. J Med Microbiol 52 (6): 483–490.
- Lardi M, Aguilar C, Pedrioli A, Omasits U, Suppiger A, Carcamo-Oyarce G et al. (2015) sigma(54)-Dependent response to nitrogen limitation and virulence in Burkholderia cenocepacia strain H111. Appl Environ Microbiol 81 (12): 4077–4089.
- Larsen GY, Stull TL, & Burns JL (1993) Marked phenotypic variability in Pseudomonas cepacia isolated from a patient with cystic fibrosis. J Clin Microbiol 31 (4): 788–792.
- Lee YA & Chan CW (2007) Molecular typing and presence of genetic markers among strains of banana finger-tip rot pathogen, Burkholderia cenocepacia, in Taiwan. Phytopathology 97 (2): 195–201.
- Lee AHY, Flibotte S, Sinha S, Paiero A, Ehrlich RL, Balashov S et al. (2017) Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs. Genome Res 27 (4): 650–662.
- Leff LG, Kernan RM, McArthur JV, & Shimkets LJ (1995) Identification of aquatic Burkholderia (Pseudomonas) cepacia by hybridization with species-specific ribosomal RNA gene probes. Appl Environ Microbiol 61 (4): 1634–1636.
- Lemaire B, Robbrecht E, van Wyk B, Van Oevelen S, Verstraete B, Prinsen E et al. (2011a) Identification, origin, and evolution of leaf nodulating symbionts of Sericanthe (Rubiaceae). J Microbiol 49 (6): 935–941.
- Lemaire B, Smets E, & Dessein S (2011b) Bacterial leaf symbiosis in Ardisia (Myrsinoideae, Primulaceae): molecular evidence for host specificity. Res Microbiol 162 (5): 528–534.
- Lemaire B, Lachenaud O, Persson C, Smets E, & Dessein S (2012a) Screening for leaf-associated endophytes in the genus Psychotria (Rubiaceae). FEMS Microbiol Ecol 81 (2): 364–372.
- Lemaire B, Van Oevelen S, De Block P, Verstraete B, Smets E, Prinsen E et al. (2012b) Identification of the bacterial endosymbionts in leaf nodules of Pavetta (Rubiaceae). Int J Syst Evol Microbiol 62: 202–209.
- Li B, Fang YA, Zhang GQ, Yu RR, Lou MM, Xie GL et al. (2010) Molecular characterization of Burkholderia cepacia complex isolates causing bacterial fruit rot of apricot. Plant Pathol J 26 (3): 223–230.
- Lieberman TD, Michel JB, Aingaran M, Potter-Bynoe G, Roux D, Davis MR et al. (2011) Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat Genet 43 (12): 1275–1280.
- Limmathurotsakul D, Chaowagul W, Chierakul W, Stepniewska K, Maharjan B, Wuthiekanun V et al. (2006) Risk factors for recurrent melioidosis in northeast Thailand. Clin Infect Dis 43 (8): 979–986.
- Lipsitz R, Garges S, Aurigemma R, Baccam P, Blaney DD, Cheng AC et al. (2012) Workshop on treatment of and postexposure prophylaxis for Burkholderia pseudomallei and B. mallei infection, 2010. Emerg Infect Dis 18: e2.
- LiPuma JJ (1998) Burkholderia cepacia epidemiology and pathogenesis: implications for infection control. Curr Opin Pulm Med 4 (6): 337–341.
-
LiPuma JJ, Currie BJ, Peacock SJ, & Vandamme P (2015)
Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax
. In Manual of Clinical Microbiology, 11th ed., vol. 1, JH Jorgensen, MA Pfaller, KC Carroll, G Funke, ML Landry, SS Richter et al. (eds). American Society for Microbiology, Washington, D.C.; pp 791–812.
10.1128/9781555817381.ch43 Google Scholar
- Liu PYF, Shi ZY, Lau YJ, Hu BS, Shyr JM, Tsai WS et al. (1995) Comparison of different pcr approaches for characterization of Burkholderia (Pseudomonas) cepacia isolates. J Clin Microbiol 33 (12): 3304–3307.
- Lopes-Santos L, Castro DB, Ferreira-Tonin M, Corrêa DB, Weir BS, Park D et al. (2017) Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov. Antonie van Leeuwenhoek 110 (6): 727–736.
- Loutet SA & Valvano MA (2011) Extreme antimicrobial peptide and polymyxin B resistance in the genus Burkholderia . Front Cell Infect Microbiol 2: 159.
- Loveridge EJ, Jones C, Bull MJ, Moody SC, Kahl MW, Khan Z et al. (2017) Reclassification of the specialized metabolite producer Pseudomonas mesoacidophila ATCC 31433 as a member of the Burkholderia cepacia complex. J Bacteriol 199. doi: 10.1128/JB.00125-17
- Lu SE, Novak J, Austin FW, Gu GY, Ellis D, Kirk M et al. (2009) Occidiofungin, a unique antifungal glycopeptide produced by a strain of Burkholderia contaminans . Biochemistry 48 (35): 8312–8321.
- Lynch KH, Seed KD, Stothard P, & Dennis JJ (2010a) Inactivation of Burkholderia cepacia complex phage KS9 gp41 identifies the phage repressor and generates lytic virions. J Virol 84 (3): 1276–1288.
- Lynch KH, Stothard P, & Dennis JJ (2010b) Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. BMC Genomics 11: 599.
- Maeda Y, Shinohara H, Kiba A, Ohnishi K, Furuya N, Kawamura Y et al. (2006) Phylogenetic study and multiplex PCR-based detection of Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli using gyrB and rpoD sequences. Int J Syst Evol Microbiol 56: 1031–1038.
- Mahenthiralingam E, Bischof J, Byrne SK, Radomski C, Davies JE, Av-Gay Y et al. (2000) DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J Clin Microbiol 38 (9): 3165–3173.
- Mahenthiralingam E, Baldwin A, Drevinek P, Vanlaere E, Vandamme P, LiPuma JJ et al. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One 1 (1): 8.
- Mahenthiralingam E, Song LJ, Sass A, White J, Wilmot C, Marchbank A et al. (2011) Enacyloxins are products of an unusual hybrid modular polyketide synthase encoded by a cryptic Burkholderia ambifaria Genomic Island. Chem Biol 18 (5): 665–677.
- Martina P, Leguizamon M, Prieto CI, Sousa SA, Montanaro P, Draghi WO et al. (2018) Burkholderia puraquae sp nov., a novel species of the Burkholderia cepacia complex isolated from hospital settings and agricultural soils. Int J Syst Evol Microbiol 68 (1): 14–20.
- Mathew A, Eberl L, & Carlier AL (2014) A novel siderophore-independent strategy of iron uptake in the genus Burkholderia . Mol Microbiol 91 (4): 805–820.
- Mathew A, Jenul C, Carlier AL, & Eberl L (2016) The role of siderophores in metal homeostasis of members of the genus Burkholderia . Environ Microbiol Rep 8 (1): 103–109.
- Matsumoto H, Itoh Y, Ohta S, & Terawaki Y (1986) A generalized transducing phage of Pseudomonas cepacia . J Gen Microbiol 132: 2583–2586.
- Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P et al. (2010) Diversity and evolution of the phenazine biosynthesis pathway. Appl Environ Microbiol 76 (3): 866–879.
- McCulloch L (1921) A bacterial disease of gladiolus. Science 54: 115–116.
- Menard A, Monnez C, Santos P, Segonds C, Caballero-Mellado J, LiPuma JJ et al. (2007) Selection of nitrogen-fixing deficient Burkholderia vietnamiensis strains by cystic fibrosis patients: involvement of nif gene deletions and auxotrophic mutations. Environ Microbiol 9 (5): 1176–1185.
- Meyers E, Bisacchi GS, Dean L, Liu WC, Minassian B, Slusarchyk DS et al. (1987) Xylocandin - a new complex of antifungal peptides .1. taxonomy, isolation and biological activity. J Antibiot 40 (11): 1515–1519.
- Mitchell RE, Greenwood DR, & Sarojini V (2008) An antibacterial pyrazole derivative from Burkholderia glumae, a bacterial pathogen of rice. Phytochemistry 69 (15): 2704–2707.
- Mitsui R, Kusano Y, Yurimoto H, Sakai Y, Kato N, & Tanaka M (2003) Formaldehyde fixation contributes to detoxification for growth of a nonmethylotroph, Burkholderia cepacia TM1, on vanillic acid. Appl Environ Microbiol 69 (10): 6128–6132.
- Moebius N, Ross C, Scherlach K, Rohm B, Roth M, & Hertweck C (2012) Biosynthesis of the respiratory toxin bongkrekic acid in the pathogenic bacterium Burkholderia gladioli . Chem Biol 19 (9): 1164–1174.
- Moon SS, Kang PM, Park KS, & Kim CH (1996) Plant growth promoting and fungicidal 4-quinolinones from Pseudomonas cepacia . Phytochemistry 42: 365–368.
- Moreira AS, Lourenco AB, & Sa-Correia I (2016) H-1-NMR-based endometabolome profiles of Burkholderia cenocepacia clonal variants retrieved from a cystic fibrosis patient during chronic infection. Front Microbiol 7: 2024.
- Morris MB & Roberts JB (1959) Group of pseudomonads able to synthesize poly-beta-hydroxybutyric acid. Nature 183 (4674): 1538–1539.
- Nacamulli C, Bevivino A, Dalmastri C, Tabacchioni S, & Chiarini L (1997) Perturbation of maize rhizosphere microflora following seed bacterization with Burkholderia cepacia MCI 7. FEMS Microbiol Ecol 23 (3): 183–193.
- Nandakumar R, Shahjahan AKM, Yuan XL, Dickstein ER, Groth DE, Clark CA et al. (2009) Burkholderia glumae and B. gladioli cause bacterial panicle blight in rice in the Southern United States. Plant Dis 93 (9): 896–905.
- Naughton LM, An SQ, Hwang I, Chou SH, He YQ, Tang JL et al. (2016) Functional and genomic insights into the pathogenesis of Burkholderia species to rice. Environ Microbiol 18 (3): 780–790.
- Nelson MJK, Montgomery SO, Oneill EJ, & Pritchard PH (1986) Aerobic metabolism of trichloroethylene by a bacterial isolate. Appl Environ Microbiol 52 (2): 383–384.
- Nguyen T, Ishida K, Jenke-Kodama H, Dittmann E, Gurgui C, Hochmuth T et al. (2008) Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection. Nat Biotechnol 26 (2): 225–233.
- Nickzad A, Lepine F, & Deziel E (2015) Quorum sensing controls swarming motility of Burkholderia glumae through regulation of rhamnolipids. PLoS One 10 (6): e0128509.
- Nicolitch O, Colin Y, Turpault MP, & Uroz S (2016) Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees. Soil Biol Biochem 103: 429–445.
- Nierman WC, DeShazer D, Kim HS, Tettelin H, Nelson KE, Feldblyum T et al. (2004) Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci U S A 101 (39): 14246–14251.
- Nijhuis EH, Maat MJ, Zeegers IWE, Waalwijk C, & Vanveen JA (1993) Selection of bacteria suitable for introduction into the rhizosphere of grass. Soil Biol Biochem 25 (7): 885–895.
- Nishiyama E, Ohtsubo Y, Nagata Y, & Tsuda M (2010) Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology. Environ Microbiol 12 (9): 2539–2558.
- Notredame C, Higgins DG, & Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302 (1): 205–217.
- Novem V, Shui GH, Wang DL, Bendt AK, Sim SH, Liu YC et al. (2009) Structural and biological diversity of lipopolysaccharides from Burkholderia pseudomallei and Burkholderia thailandensis . Clin Vaccine Immunol 16 (10): 1420–1428.
- Nzula S, Vandamme P, & Govan JRW (2000) Sensitivity of the Burkholderia cepacia complex and Pseudomonas aeruginosa to transducing bacteriophages. FEMS Immunol Med Microbiol 28 (4): 307–312.
- O'Carroll MR, Kidd TJ, Coulter C, Smith HV, Rose BR, Harbour C et al. (2003) Burkholderia pseudomallei: another emerging pathogen in cystic fibrosis. Thorax 58 (12): 1087–1091.
- Ong KS, Aw YK, Lee LH, Yule CM, Cheow YL, & Lee SM (2016) Burkholderia paludis sp nov., an antibiotic-siderophore producing novel Burkholderia cepacia complex species, isolated from Malaysian tropical peat swamp soil. Front Microbiol 7: 2046.
- O'Sullivan LA & Mahenthiralingam E (2005) Biotechnological potential within the genus Burkholderia . Lett Appl Microbiol 41 (1): 8–11.
- Oyaizu H & Komagata K (1983) Grouping of Pseudomonas species on the basis of cellular fatty-acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty-acids. J Gen Appl Microbiol 29 (1): 17–40.
- Palleroni NJ & Doudoroff M (1972) Some properties and taxonomic subdivisions of genus Pseudomonas . Annu Rev Phytopathol 10: 73–100.
-
Palleroni NJ & Holmes B (1981)
Pseudomonas cepacia sp. nov, nom. rev. Int J Syst Bacteriol
31 (4): 479–481.
10.1099/00207713-31-4-479 Google Scholar
- Palleroni NJ, Kunisawa R, Contopoulos R, & Doudoroff M (1973) Nucleic acid homologies in the genus Pseudomonas . Int J Syst Bacteriol 23 (4): 333–339.
- Panhwar QA, Naher UA, Radziah O, Shamshuddin J, & Razi IM (2015) Eliminating aluminum toxicity in an acid sulfate soil for rice cultivation using plant growth promoting bacteria. Molecules 20 (3): 3628–3646.
- Parke JL (1990) Population-dynamics of Pseudomonas cepacia in the pea spermosphere in relation to biocontrol of Pythium. Phytopathology 80 (12): 1307–1311.
- Parke JL & Gurian-Sherman D (2001) Diversity of the Burkholderia cepacia complex and implications for risk assessment of biological control strains. Annu Rev Phytopathol 39: 225–258.
- Parker WL, Rathnum ML, Seiner V, Trejo WH, Principe PA, & Sykes RB (1984) Cepacin-a and cepacin-b, 2 new antibiotics produced by Pseudomonas cepacia . J Antibiot 37 (5): 431–440.
- Parr TR, Moore RA, Moore LV, & Hancock REW (1987) Role of porins in intrinsic antibiotic-resistance of Pseudomonas cepacia . Antimicrob Agents Chemother 31 (1): 121–123.
- Peacock SJ, Schweizer HP, Dance DA, Smith TL, Gee JE, Wuthiekanun V et al. (2008) Management of accidental laboratory exposure to Burkholderia pseudomallei and B. mallei . Emerg Infect Dis 14 (7): e2.
- Peddayelachagiri BV, Paul S, Nagaraj S, Gogoi M, Sripathy MH, & Batra HV (2016) Prevalence and identification of Burkholderia pseudomallei and near-neighbor species in the Malabar Coastal Region of India. PLoS Negl Trop Dis 10 (9): e0004956.
- Peeters E, Sass A, Mahenthiralingam E, Nelis H, & Coenye T (2010) Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite. BMC Genomics 11: 90.
- Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, & Vandamme P (2013) Burkholderia pseudomultivorans sp. nov., a novel Burkholderia cepacia complex species from human respiratory samples and the rhizosphere. Syst Appl Microbiol 36 (7): 483–489.
- Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, & Vandamme P (2014) Validation List No. 155. Int J Syst Evol Microbiol 64: 1–5.
- Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, & Vandamme P (2016) Phylogenomic study of Burkholderia glathei-like organisms, proposal of 13 novel Burkholderia species and emended descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae . Front Microbiol 7: 877.
- Peeters C, Cooper VS, Hatcher PJ, Verheyde B, Carlier A, & Vandamme P (2017) Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure. PLoS One 12 (4): e0176191.
- Perez-Pantoja D, Donoso R, Agullo L, Cordova M, Seeger M, Pieper DH et al. (2012) Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environ Microbiol 14 (5): 1091–1117.
- Pessi G, Braunwalder R, Grunau A, Omasits U, Ahrens CH, & Eberl L (2013) Response of Burkholderia cenocepacia H111 to micro-oxia. PLoS One 8 (9): e73939.
- Phillips MJ, Delsuc F, & Penny D (2004) Genome-scale phylogeny and the detection of systematic biases. Mol Biol Evol 21 (7): 1455–1458.
- Pinto-Carbo M, Sieber S, Dessein S, Wicker T, Verstraete B, Gademann K et al. (2016) Evidence of horizontal gene transfer between obligate leaf nodule symbionts. ISME J 10 (9): 2092–2105.
- Plongla R, Panagea T, Pincus DH, Jones MC, & Gilligan PH (2016) Identification of Burkholderia and uncommon glucose-nonfermenting Gram-negative bacilli isolated from patients with cystic fibrosis by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). J Clin Microbiol 54 (12): 3071–3072.
- Podnecky NL, Rhodes KA, & Schweizer HP (2015) Efflux pump-mediated drug resistance in Burkholderia. Front Microbiol 6: 305.
- Poole K & Srikumar R (2001) Multidrug efflux in Pseudomonas aeruginosa: components, mechanisms and clinical significance. Curr Top Med Chem 1 (1): 59–71.
- Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL et al. (2012) Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One 7 (5): e37723.
- Price EP, MacHunter B, Spratt BG, Wagner DM, Currie BJ, & Sarovich DS (2016) Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species. J Med Microbiol 65: 992–997.
- Rabkin CS, Jarvis WR, Anderson RL, Govan J, Klinger J, Lipuma J et al. (1989) Pseudomonas cepacia typing systems - collaborative study to assess their potential in epidemiologic investigations. Rev Infect Dis 11 (4): 600–607.
- Ramette A, LiPuma JJ, & Tiedje JM (2005) Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl Environ Microbiol 71 (3): 1193–1201.
- Ramsay BA, Lomaliza K, Chavarie C, Dube B, Bataille P, & Ramsay JA (1990) Production of poly-(beta-hydroxybutyric-co-beta-hydroxyvaleric) acids. Appl Environ Microbiol 56 (7): 2093–2098.
- Redfearn MS & Palleroni NJ (1975) Glanders and meliodosis. In Diseases Transmitted from Animals to Man, 6th ed., vol. 6, WT Hubbert, WF McCulloch, & PR Schnurrenberger (eds). C. C. Thomas, Springfield, IL; pp 110–128.
- Redfearn MS, Palleroni NJ, & Stanier RY (1966) A comparative study of Pseudomonas pseudomallei and Bacillus mallei . J Gen Microbiol 43: 293–313.
- Rhodes KA & Schweizer HP (2016) Antibiotic resistance in Burkholderia species. Drug Resist Updat 28: 82–90.
- Richardson J, Stead DE, Elphinstone JG, & Coutts RHA (2002) Diversity of Burkholderia isolates from woodland rhizosphere environments. J Appl Microbiol 93 (4): 616–630.
- Rohmer M, Bouvier P, & Ourisson G (1979) Molecular evolution of biomembranes - structural equivalents and phylogenetic precursors of sterols. Proc Natl Acad Sci U S A 76 (2): 847–851.
- Ross C, Opel V, Scherlach K, & Hertweck C (2014) Biosynthesis of antifungal and antibacterial polyketides by Burkholderia gladioli in coculture with Rhizopus microsporus . Mycoses 57: 48–55.
- Sajjan US, Sun L, Goldstein R, & Forstner JF (1995) Cable (cbl) type-ii pili of cystic fibrosis-associated Burkholderia (Pseudomonas) cepacia - nucleotide-sequence of the cbla major subunit pilin gene and novel morphology of the assembled appendage fibers. J Bacteriol 177 (4): 1030–1038.
- Sajjan U, Wu YJ, Kent G, & Forstner J (2000) Preferential adherence of cable-piliated Burkholderia cepacia to respiratory epithelia of CF knockout mice and human cystic fibrosis lung explants. J Med Microbiol 49 (10): 875–885.
- Sajjan US, Xie H, Lefebre MD, Valcano MA, & Forsther JF (2003) Identification and molecular analysis of cable pilus biosynthesis genes in Burkholderia cepacia . Microbiology 149: 961–971.
- Samuels SB, Moss CW, & Weaver RE (1973) The fatty acids of Pseudomonas multivorans (Pseudomonas cepacia) and Pseudomonas kingii . J Gen Microbiol 74 (Feb): 275–279.
- Sass AM, Schmerk C, Agnoli K, Norville PJ, Eberl L, Valvano MA et al. (2013) The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia . ISME J 7 (8): 1568–1581.
- Sawana A, Adeolu M, & Gupta RS (2014) Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov harboring environmental species. Front Genet 5: 429.
- Schellenberg B, Bigler L, & Dudler R (2007) Identification of genes involved in the biosynthesis of the cytotoxic compound glidobactin from a soil bacterium. Environ Microbiol 9 (7): 1640–1650.
- Schmidt S, Blom JF, Pernthaler J, Berg G, Baldwin A, Mahenthiralingam E et al. (2009) Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex. Environ Microbiol 11 (6): 1422–1437.
- Seed KD & Dennis JJ (2005) Isolation and characterization of bacteriophages of the Burkholderia cepacia complex. FEMS Microbiol Lett 251 (2): 273–280.
- Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30 (14): 2068–2069.
- Semler DD, Lyunch KH, & Dennis JJ (2012) The promise of bacteriophage therapy for Burkholderia cepacia complex respiratory infections. Front Cell Infect Microbiol 1: 27.
- Severini G (1913) Una bactériosi dell'Ixia maculata e del Gladiolus coluilli . Ann Bot (Rome) 11: 413–424.
- Seyedsayamdost MR, Chandler JR, Blodgett JAV, Lima PS, Duerkop BA, Oinuma KI et al. (2010) Quorum-sensing-regulated bactobolin production by Burkholderia thailandensis E264. Org Lett 12 (4): 716–719.
- Shan JY, Korbsrisate S, Withatanung P, Adler NL, Clokie MRJ, & Galyov EE (2014) Temperature dependent bacteriophages of a tropical bacterial pathogen. Front Microbiol 5: 599.
- Sharrer GT (1995) The great glanders epizootic, 1861–1866 - a civil-war legacy. Agric Hist 69 (1): 79–101.
- Shehata HR, Ettinger CL, Eisen JA, & Raizada MN (2016) Genes required for the anti-fungal activity of a bacterial endophyte isolated from a corn landrace grown continuously by subsistence farmers since 1000 BC. Front Microbiol 7: 1548.
- Shelly DB, Spilker T, Gracely EJ, Coenye T, Vandamme P, & LiPuma JJ (2000) Utility of commercial systems for identification of Burkholderia cepacia complex from cystic fibrosis sputum culture. J Clin Microbiol 38 (8): 3112–3115.
- Shields MS, Reagin MJ, Gerger RR, Campbell R, & Somerville C (1995) TOM, a new aromatic degradative plasmid from Burkholderia (Pseudomonas) cepacia G4. Appl Environ Microbiol 61 (4): 1352–1356.
- Silipo A, Molinaro A, Ierano T, De Soyza A, Sturiale L, Garozzo D et al. (2007) The complete structure and pro-inflammatory activity of the lipooligosaccharide of the highly epidemic and virulent gram-negative bacterium Burkholderia cenocepacia ET-12 (Strain J2315). Chem Eur J 13 (12): 3501–3511.
- Simpson IN, Finlay J, Winstanley DJ, Dewhurst N, Nelson JW, Butler SL et al. (1994) Multi-resistance isolates possessing characteristics of both Burkholderia (Pseudomonas) cepacia and Burkholderia gladioli from patients with cystic fibrosis. J Antimicrob Chemother 34 (3): 353–361.
-
Sinsabaugh HA & Howard GW (1975) Emendation of the description of Pseudomonas cepacia Burkholder (synonyms: Pseudomonas multivorans Stanier et al., Pseudomonas kingae Jonsson; EO-1 Group). Int J Syst Bacteriol
25 (2): 187–201.
10.1099/00207713-25-2-187 Google Scholar
-
Skerman VBD, McGowan V, & Sneath PHA (1980) Approved lists of bacterial names. Int J Syst Bacteriol
30 (1): 225–420.
10.1099/00207713-30-1-225 Google Scholar
-
Snell JJS, Hill LR, Lapage SP, & Curtis MA (1972) Identification of Pseudomonas cepacia Burkholder and its synonymy with Pseudomonas kingii Jonsson. Int J Syst Bacteriol
22: 127–138.
10.1099/00207713-22-3-127 Google Scholar
- Solis R, Bertani I, Degrassi G, Devescovi G, & Venturi V (2006) Involvement of quorum sensing and RpoS in rice seedling blight caused by Burkholderia plantarii . FEMS Microbiol Lett 259 (1): 106–112.
- Song L, Jenner M, Masschelein J, Jones C, Bull MJ, Harris SR et al. (2017) Discovery and biosynthesis of gladiolin: a Burkholderia gladioli antibiotic with promising activity against Mycobacterium tuberculosis . J Am Chem Soc. doi: 10.1021/jacs.7b03382
- Spilker T, Baldwin A, Bumford A, Dowson CG, Mahenthiralingam E, & LiPuma JJ (2009) Expanded multilocus sequence typing for Burkholderia species. J Clin Microbiol 47 (8): 2607–2610.
- Sprague LD & Neubauer H (2004) Melioidosis in animals: a review on epizootiology, diagnosis and clinical presentation. J Vet Med B Infect Dis Vet Public Health 51 (7): 305–320.
- Srinivasan S, Kim J, Kang SR, Jheong WH, & Lee SS (2013) Burkholderia humi sp nov., isolated from peat soil. Curr Microbiol 66 (3): 300–305.
- Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (9): 1312–1313.
- Stanier RY, Palleroni NJ, & Doudoroff M (1966) Aerobic pseudomonads - a taxonomic study. J Gen Microbiol 43 (2): 159–271.
- Stead DE (1992) Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. Int J Syst Bacteriol 42 (2): 281–295.
- Stopnisek N, Bodenhausen N, Frey B, Fierer N, Eberl L, & Weisskopf L (2014) Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environ Microbiol 16 (6): 1503–1512.
- Stopnisek N, Zuhlke D, Carlier A, Barberan A, Fierer N, Becher D et al. (2016) Molecular mechanisms underlying the close association between soil Burkholderia and fungi. ISME J 10 (1): 253–264.
- Storms V, Van Den Vreken N, Coenye T, Mahenthiralingam E, LiPuma JJ, Gillis M et al. (2004) Polyphasic characterisation of Burkholderia cepacia-like isolates leading to the emended description of Burkholderia pyrrocinia . Syst Appl Microbiol 27 (5): 517–526.
- Storms V, Van Den Vreken N, Coenye T, Mahenthiralingam E, LiPuma JJ, Gillis M et al. (2005) List of Changes in Taxonomic Opinion no. 1. Int J Syst Evol Microbiol 55: 7–8.
- Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, & Venturi V (2012) Common features of environmental and potentially beneficial plant-associated Burkholderia . Microb Ecol 63 (2): 249–266.
- Summer EJ, Gonzalez CF, Bomer M, Carlile T, Embry A, Kucherka AM et al. (2006) Divergence and mosaicism among virulent soil phages of the Burkholderia cepacia complex. J Bacteriol 188 (1): 255–268.
- Sun L, Jiang RZ, Steinbach S, Holmes A, Campanelli C, Forstner J et al. (1995) The emergence of a highly transmissible lineage of cbl(+) Pseudomonas (Burkholderia) cepacia causing CF center epidemics in North-America and Britain. Nat Med 1 (7): 661–666.
- Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR et al. (2013) Metagenomic species profiling using universal phylogenetic marker genes. Nat Methods 10 (12): 1196–1199.
- Suttisunhakul V, Pumpuang A, Ekchariyawat P, Wuthiekanun V, Elrod MG, Turner P et al. (2017) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of Burkholderia pseudomallei from Asia and Australia and differentiation between Burkholderia species. PLoS One 12 (4): e0175294.
- Tabacchioni S, Visca P, Chiarini L, Bevivino A, Diserio C, Fancelli S et al. (1995) Molecular characterisation of rhizosphere and clinical isolates of Burkholderia cepacia . Res Microbiol 146 (7): 531–542.
- Tawfik KA, Jeffs P, Bray B, Dubay G, Falkinham JO, Mesbah M et al. (2010) Burkholdines 1097 and 1229, potent antifungal peptides from Burkholderia ambifaria 2.2N. Org Lett 12 (4): 664–666.
- Taylor CJ, Anderson AJ, & Wilkinson SG (1998) Phenotypic variation of lipid composition in Burkholderia cepacia: a response to increased growth temperature is a greater content of 2-hydroxy acids in phosphatidyl ethanol amine and ornithine amide lipid. Microbiology 144: 1737–1745.
- Thiergart T, Landan G, & Martin WF (2014) Concatenated alignments and the case of the disappearing tree. BMC Evol Biol 14: 266.
- Thomas MS (2007) Iron acquisition mechanisms of the Burkholderia cepacia complex. Biometals 20 (3–4): 431–452.
- Thomson ELS & Dennis JJ (2012) A Burkholderia cepacia complex non-ribosomal peptide-synthesized toxin is hemolytic and required for full virulence. Virulence 3 (3): 286–298.
- Torbeck L, Raccasi D, Guilfoyle DE, Friedman RL, & Hussong D (2011) Burkholderia cepacia: this decision is overdue. PDA J Pharm Sci Technol 65: 535–543.
- Trung HM, Van NV, Vien NV, Lam DT, & Lien M (1993) Occurrence of rice grain rot disease in Vietnam. Int Rice Res Notes 18: 30.
- Tsuchiya Y & Muko H (1963) Occurrence of neck rot disease of Freesia sp. in Japan. Chukan Hokoku Plant Pathol Sect NIAS 16: 82–84.
- Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M et al. (2017a) Burkholderia humptydooensis sp nov., a new species related to Burkholderia thailandensis and the fifth member of the Burkholderia pseudomallei complex. Appl Environ Microbiol 85 (4): e02802-16.
- Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M et al. (2017b) Validation List No. 178. Int J System Evol Microbiol 67: 4291–4293.
- Tunney MM, Field TR, Moriarty TF, Patrick S, Doering G, Muhlebach MS et al. (2008) Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis. Am J Respir Crit Care Med 177 (9): 995–1001.
- Turner JM & Messenger AJ (1986) Occurrence, biochemistry and physiology of phenazine pigment production. Adv Microb Physiol 27: 211–275.
-
Ura H, Furuya N, Iiyama K, Hidaka M, Tsuchiya K, & Matsuyama N (2006)
Burkholderia gladioli associated with symptoms of bacterial grain rot and leaf-sheath browning of rice plants. J Gen Plant Pathol
72: 98–103.
10.1007/s10327-005-0256-6 Google Scholar
- Urakami T, Ito-Yoshida C, Araki H, Kijima T, Suzuki KI, & Komagata K (1994) Transfer of Pseudomonas plantarii and Pseudomonas glumae to Burkholderia as Burkholderia spp. and description of Burkholderia vandii sp. nov. Int J Syst Bacteriol 44 (2): 235–245.
- Urban TA, Goldberg JB, Forstner JF, & Sajjan US (2005) Cable pili and the 22-kilodalton adhesin are required for Burkholderia cenocepacia binding to and transmigration across the squamous epithelium. Infect Immun 73 (9): 5426–5437.
- Van VT, Berge O, Ke SN, Balandreau J, & Heulin T (2000) Repeated beneficial effects of rice inoculation with a strain of Burkholderia vietnamiensis on early and late yield components in low fertility sulphate acid soils of Vietnam. Plant Soil 218 (1–2): 273–284.
-
van Damme PA, Johannes AG, Cox HC, & Berends W (1960) On toxoflavin, the yellow poison of Pseudomonas cocovenenans
. Recl Trav Chim Pays-Bas Belg
79: 255–267.
10.1002/recl.19600790305 Google Scholar
- Van Oevelen S, De Wachter R, Vandamme P, Robbrecht E, & Prinsen E (2002) Identification of the bacterial endosymbionts in leaf galls of Psychotria (Rubiaceae, angiosperms) and proposal of ‘Candidatus Burkholderia kirkii’ sp nov. Int J Syst Evol Microbiol 52: 2023–2027.
- Van Oevelen S, De Wachter R, Vandamme P, Robbrecht E, & Prinsen E (2004) ‘Candidatus Burkholderia calva’ and ‘Candidatus Burkholderia nigropunctata’ as leaf gall endosymbionts of African Psychotria . Int J Syst Evol Microbiol 54: 2237–2239.
- Vandamme P & Dawyndt P (2011) Classification and identification of the Burkholderia cepacia complex: past, present and future. Syst Appl Microbiol 34 (2): 87–95.
- Vandamme P & Peeters C (2014) Time to revisit polyphasic taxonomy. Antonie van Leeuwenhoek 106 (1): 57–65.
- Vandamme P, Holmes B, Vancanneyt M, Coenye T, Hoste B, Coopman R et al. (1997) Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int J Syst Bacteriol 47 (4): 1188–1200.
- Vandamme P, Mahenthiralingam E, Holmes B, Coenye T, Hoste B, De Vos P, Henry D, & Speert DP (2000a) Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia Genomovar IV). J Clin Microbiol 38: 1042–1047.
- Vandamme P, Mahenthiralingam E, Holmes B, Coenye T, Hoste B, De Vos P, Henry D, & Speert DP (2000b) Validation List No. 75. Int J Syst Evol Microbiol 50: 1415–1417.
- Vandamme P, Henry D, Coenye T, Nzula S, Vancanneyt M, LiPuma JJ et al. (2002) Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol Med Microbiol 33 (2): 143–149.
- Vandamme P, Holmes B, Coenye T, Goris J, Mahenthiralingam E, LiPuma JJ et al. (2003) Burkholderia cenocepacia sp nov - a new twist to an old story. Res Microbiol 154 (2): 91–96.
- Vandamme P, De Brandt E, Houf K, & Salles JF (2013) Burkholderia humi sp nov., Burkholderia choica sp nov., Burkholderia telluris sp nov., Burkholderia terrestris sp nov and Burkholderia udeis sp nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil. Int J Syst Evol Microbiol 63: 4707–4718.
- Vandamme P, Peeters C, De Smet B, Price EP, Sarovich DS, Henry DA et al. (2017a) Comparative genomics of Burkholderia singularis sp. nov., a low G + C content, free-living bacterium that defies taxonomic dissection of the genus Burkholderia . Front Microbiol 8: 1679.
- Vandamme P, Peeters C, De Smet B, Price EP, Sarovich DS, Henry DA et al. (2017b) Validation List 178. Int J System Evol Microbiol 67: 4291–4293.
- Vanlaere E, Coenye T, Samyn E, Van den Plas C, Govan J, De Baets F et al. (2005) A novel strategy for the isolation and identification of environmental Burkholderia cepacia complex bacteria. FEMS Microbiol Lett 249 (2): 303–307.
- Vanlaere E, LiPuma JJ, Baldwin A, Henry D, De Brandt E, Mahenthiralingam E et al. (2008) Burkholderia latens sp nov., Burkholderia diffusa sp nov., Burkholderia arboris sp nov., Burkholderia seminalis sp nov and Burkholderia metallica sp nov., novel species within the Burkholderia cepacia complex. Int J Syst Evol Microbiol 58: 1580–1590.
- Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ et al. (2009) Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int J Syst Evol Microbiol 59: 102–111.
- Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 (5667): 66–74.
- Vermis K, Vandamme PA, & Nelis HJ (2003) Burkholderia cepacia complex genomovars: utilization of carbon sources, susceptibility to antimicrobial agents and growth on selective media. J Appl Microbiol 95 (6): 1191–1199.
- Vermis K, Coenye T, LiPuma JJ, Mahenthiralingam E, Nelis HJ, & Vandamme P (2004) Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp nov. Int J Syst Evol Microbiol 54: 689–691.
- Verstraete B, Van Elst D, Steyn H, Van Wyk B, Lemaire B, Smets E et al. (2011) Endophytic bacteria in toxic south african plants: identification, phylogeny and possible involvement in gousiekte. PLoS One 6 (4): e19265.
- Vial L, Groleau M-C, Dekimpe V, & Deziel E (2007) Burkholderia diversity and versatility: an inventory of the extracellular products. J Microbiol Biotechnol 17 (9): 1407–1429.
- Vial L, Chapalain A, Groleau M-C, & Deziel E (2011) The various lifestyles of the Burkholderia cepacia complex species: a tribute to adaptation. Environ Microbiol 13 (1): 1–12.
- Viallard V, Poirier I, Cournoyer B, Haurat J, Wiebkin S, Ophel-Keller K et al. (1998) Burkholderia graminis sp, nov., a rhizospheric Burkholderia species, and reassessment of Pseudomonas phenazinium, Pseudomonas pyrrocinia and Pseudomonas glathei as Burkholderia. Int J Syst Bacteriol 48: 549–563.
- Vinion-Dubiel AD & Goldberg JB (2003) Lipopolysaccharide of Burkholderia cepacia complex. J Endotoxin Res 9 (4): 201–213.
- Vogel HJ & Banner DM (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem 218: 97–106.
- Walsh AL, Wuthiekanun V, Smith MCD, Suputtamongkol Y, & White NJ (1995) Selective broths for the isolation of Pseudomonas pseudomallei from clinical samples. Trans R Soc Trop Med Hyg 89 (1): 124.
- Wang Z & Wu M (2013) A phylum-level bacterial phylogenetic marker database. Mol Biol Evol 30 (6): 1258–1262.
- Wang C, Henkes LM, Doughty LB, He M, Wang DF, Meyer-Almes FJ et al. (2011) Thailandepsins: bacterial products with potent histone deacetylase inhibitory activities and broad-spectrum antiproliferative activities. J Nat Prod 74 (10): 2031–2038.
- Wang MC, Hashimoto M, & Hashidoko Y (2013) Carot-4-en-9,10-Diol, a conidiation-inducing sesquiterpene diol produced by Trichoderma virens PS1-7 upon exposure to chemical stress from highly active iron chelators. Appl Environ Microbiol 79 (6): 1906–1914.
- Weber CF & King GM (2017a) Volcanic soils as sources of novel CO-oxidizing Paraburkholderia and Burkholderia: Paraburkholderia hiiakae sp. nov., Paraburkholderia metrosideri sp. nov., Paraburkholderia paradisi sp. nov., Paraburkholderia peleae sp. nov., and Burkholderia alpina sp. nov. a member of the Burkholderia cepacia complex. Front Microbiol 8: 207. doi: 10.3389/fmicb.2017.00207
- Weber CF & King GM (2017b) Validation List 176. Int J System Evol Microbiol 67: 2075–2078
- Wheelis M (1998) First shots fired in biological warfare. Nature 395 (6699): 213.
- Whitby PW, VanWagoner TM, Springer JM, Morton DJ, Seale TW, & Stull TL (2006) Burkholderia cenocepacia utilizes ferritin as an iron source. J Med Microbiol 55 (6): 661–668.
- Whitmore A (1913) An account of a glanders-like disease occurring in Rangoon. J Hyg 13: 1–34.
- Wieczorek R, Steinbuchel A, & Schmidt B (1996) Occurrence of polyhydroxyalkanoic acid granule-associated proteins related to the Alcaligenes eutrophus H16 GA24 protein in other bacteria. FEMS Microbiol Lett 135 (1): 23–30.
- Winsor GL, Khaira B, Van Rossum T, Lo R, Whiteside MD, & Brinkman FSL (2008) The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinformatics 24 (23): 2803–2804.
- Wong Y-C, Abd El Ghany M, Naeem R, Lee K-W, Tan Y-C, Pain A et al. (2016) Candidate essential genes in Burkholderia cenocepacia J2315 identified by genome-wide TraDIS. Front Microbiol 7: 1288.
- Woo HL, Hazen TC, Simmons BA, & DeAngelis KM (2014) Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Syst Appl Microbiol 37 (1): 60–67.
- Wopperer J, Cardona ST, Huber B, Jacobi CA, Valvano MA, & Eberl L (2006) A quorum-quenching a approach to investigate the conservation of quorum-sensing-regulated functions within the Burkholderia cepacia complex. Appl Environ Microbiol 72 (2): 1579–1587.
- Wright RM, Moore JE, Shaw A, Dunbar K, Dodd M, Webb K et al. (2001) Improved cultural detection of Burkholderia cepacia from sputum in patients with cystic fibrosis. J Clin Pathol 54 (10): 803–805.
- Wuthiekanun V, Dance DAB, Wattanagoon Y, Supputtamongkol Y, Chaowagul W, & White NJ (1990) The use of selective media for the isolation of Pseudomonas pseudomallei in clinical practice. J Med Microbiol 33 (2): 121–126.
- Wuthiekanun V, Chierakul W, Langa S, Chaowagul W, Panpitpat C, Saipan P et al. (2006) Development of antibodies to Burkholderia pseudomallei during childhood in melioidosis-endemic northeast Thailand. Am J Trop Med Hyg 74 (6): 1074–1075.
- Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y et al. (1992) Proposal of Burkholderia gen. nov.; and transfer of seven species of the Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36 (12): 1251–1275.
-
Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T, & Arakawa M (1993) Validation List No. 45. Int J Syst Bacteriol
43: 398–399.
10.1099/00207713-43-2-398 Google Scholar
- Yabuuchi E, Kosako Y, Yano I, Hotta H, & Nishiuchi Y (1995) Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol Immunol 39 (11): 897–904.
- Yabuuchi E, Kawamura Y, Ezaki T, Ikedo M, Dejsirilert S, Fujiwara N et al. (2000) Burkholderia uboniae sp. nov., L-arabinose-assimilating but different from Burkholderia thailandensis and Burkholderia vietnamiensis . Microbiol Immunol 44 (4): 307–317.
- Yang HM, Chaowagul W, & Sokol PA (1991) Siderophore production by Pseudomonas pseudomallei . Infect Immun 59 (3): 776–780.
- Yoder-Himes DR, Chain PSG, Zhu Y, Wurtzel O, Rubin EM, Tiedje JM et al. (2009) Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proc Natl Acad Sci U S A 106 (10): 3976–3981.
- Yohalem DS & Lorbeer JW (1994) Intraspecific metabolic diversity among strains of Burkholderia cepacia isolated from decayed onions, soils, and the clinical environment. Antonie Van Leeuwenhoek 65 (2): 111–131.
- Yordpratum U, Tattawasart U, Wongratanacheewin S, & Sermswan RW (2011) Novel lytic bacteriophages from soil that lyse Burkholderia pseudomallei . FEMS Microbiol Lett 314 (1): 81–88.
- Yutin N, Puigbo P, Koonin EV, & Wolf YI (2012) Phylogenomics of prokaryotic r proteins. PLoS One 7 (5): e36972.
- Zhao NX, Qu CF, Wang ET, & Chen WX (1995) Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenenans (van Damme et al. 1960) comb. nov. Int J Syst Bacteriol 45 (3): 600–603.
- Zhou-qi C, Zhu B, Xie G-L, Li B, & Huang S-W (2016) Research status and prospect of Burkholderia glumae, the pathogen causing bacterial panicle blight. Rice Sci 23: 111–118.
- Zopf W (1885) Die Spaltpilze. 3rd ed. Edward Trewendt, Breslau pp 1–127.
- Zughaier SM, Ryley HC, & Jackson SK (1999) A melanin pigment purified from an epidemic strain of Burkholderia cepacia attenuates monocyte respiratory burst activity by scavenging superoxide anion. Infect Immun 67 (2): 908–913.