Algibacter - Nedashkovskaya - Major Reference Works - Wiley Online Library

Algibacter ^†,^‡

Bacteroidetes

Flavobacteriia

Flavobacteriales

Flavobacteriaceae

View previous versions

Olga I. Nedashkovskaya

G.B. Elyakov Pacific Institute of Bioorganic Chemistry of Far Eastern Branch of Russian Academy of Sciences, Vladivostok, Russia

Search for more papers by this author

Song-Gun Kim,

Song-Gun Kim

Korea Research Institute of Bioscience and Biotechnology, Jeonbuk, Republic of Korea

Search for more papers by this author

Olga I. Nedashkovskaya,

Olga I. Nedashkovskaya

G.B. Elyakov Pacific Institute of Bioorganic Chemistry of Far Eastern Branch of Russian Academy of Sciences, Vladivostok, Russia

Search for more papers by this author

Song-Gun Kim,

Song-Gun Kim

Korea Research Institute of Bioscience and Biotechnology, Jeonbuk, Republic of Korea

Search for more papers by this author

First published: 06 June 2019

https://doi.org/10.1002/9781118960608.gbm00294.pub2

^†

Nedashkovskaya, Kim, Han, Rhee, Lysenko, Rohde et al., 2004, 1260^VP, emend. Nedashkovskaya, Vancanneyt, Kim, Hoste and Bae 2007, 2149, emend. Park, Hwang, Lee, Baik and Seong 2013g, 3499

^‡

Published by John Wiley & Sons, Inc., in association with Bergey's Manual Trust.

^§

Update based on the original article by Nedashkovskaya, O. I. and Kim, S. B. in Bergey's Manual of Systematics of Archaea and Bacteria, published by John Wiley & Sons, Inc., in association with Bergey's Manual Trust. ©2015, Bergey's Manual Trust.

Share a link

Email
Wechat
Bluesky

Abstract

Al.gi.bac'ter. L. fem. n. alga seaweed; N.L. masc. n. bacter rod; N.L. masc. n. Algibacter rod isolated from seaweed.

Bacteroidetes / Flavobacteriia / Flavobacteriales / Flavobacteriaceae / Algibacter

The genus Algibacter, a member of the family Flavobacteriaceae, was proposed by Nedashkovskaya et al. in 2004 to accommodate Gram-negative, facultatively anaerobic, gliding, and oxidase-positive bacteria. The close phylogenetic relatives of the genus Algibacter are members of the family Flavobacteriaceae such as Arenitalea, Changchengzhania, Flaviramulus, Gaetbulibacter, Litoribaculum, Mariniflexile, Postechiella, Sabulilitoribacter, and Tamlana with sequence similarity ranges 94.9–97.1, 93.7–96.0, 93.3–96.4, 93.1–96.9, 92.3–96.1, 92–95.5, 93.9–95.6, 94.2–96.6, and 92.1–96.8%, respectively. On marine agar, colonies of the majority Algibacter species are regular, round, low convex, shiny, and yellow or orange pigmented. Growth occurs with 0–8% NaCl, at pH 5.0–11.0, and at 0–55°C. The optimal growth is observed at 15–28°C, at pH 7.0–8.0, and with 0.5–3% NaCl. Algibacter strains cannot hydrolyze chitin and urea. The predominant cellular fatty acids of the known members of the genus Algibacter are iso-C_15:0 (4.7–34.4%), iso-C_15:1 G (5.0–22.8%), iso-C_15:0 3-OH (4.5–16.7%), and iso-C_17:0 3-OH (3.1–16.9%). The major respiratory quinone is MK-6. The main polar lipid is phosphatidylethanolamine. At the time of writing, the genus Algibacter comprised 14 validly described species that were isolated from the different marine environments including seawater, sediments, seaweeds, and echinoderms. The type species of the genus is Algibacter lectus. The Algibacter species share 16S rRNA gene sequence similarities ranging from 94.2 to 99.4% to one another. The DNA–DNA relatedness between the type strains of the Algibacter species is 15–34%.

DNA G + C content (mol%): 30–41 (T _m, HPLC and genome sequence).

Type species: Algibacter lectus Nedashkovskaya, Kim, Han, Rhee, Lysenko, Rohde, Zhukova, Frolova, Mikhailov and Bae 2004, 1260^VP.

References

Agogue H, Casamayor EO, Bourrain M, Obernosterer I, Joux F, Herndl GJ et al. (2005) A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiol Ecol 54: 269–280.
10.1016/j.femsec.2005.04.002
CAS PubMed Web of Science® Google Scholar
Barbeyron T, L'Haridon S, Michel G, & Czizek M (2008) Mariniflexile fucanivorans sp. nov., a marine member of the Flavobacteriaceae that degrades sulphated fucans from brown algae. Int J Syst Evol Microbiol 58: 2107–2113.
10.1099/ijs.0.65674-0
CAS PubMed Web of Science® Google Scholar
Einen J & Øvreås L (2006) Flaviramulus basaltis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seafloor basalt. Int J Syst Evol Microbiol 56: 2455–2461.
10.1099/ijs.0.64404-0
CAS PubMed Web of Science® Google Scholar
Fernandez-Piquer J, Bowman JP, Ross T, & Tamplin ML (2012) Molecular analysis of the bacterial communities in the live Pacific oyster (Crassostrea gigas) and the influence of post harvest temperature on its structure. J Appl Microbiol 112: 1134–1143.
10.1111/j.1365-2672.2012.05287.x
CAS PubMed Web of Science® Google Scholar
Gordon RE & Mihm JM (1962) Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98: 628–636.
10.1111/j.1749-6632.1962.tb30585.x
Web of Science® Google Scholar
Hahnke RL & Harder J (2013) Phylogenetic diversity of Flavobacteria isolated from the North Sea on solid media. Syst Appl Microbiol 36: 497–504.
10.1016/j.syapm.2013.06.006
CAS PubMed Web of Science® Google Scholar
Jin HM & Jeon CO (2015) Litoribaculum gwangyangense gen. nov., sp. nov., isolated from a sea-tidal flat sediment. Int J Syst Evol Microbiol 65: 381–387.
10.1099/ijs.0.068684-0
CAS PubMed Web of Science® Google Scholar
Jung SY, Kang SJ, Lee MH, Lee SY, Oh TK, & Yoon JH (2005) Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 55: 1845–1849.
10.1099/ijs.0.63738-0
CAS PubMed Web of Science® Google Scholar
Jung YJ, Lee YM, Baek K, Hwang CY, Cho Y, Hong SG et al. (2015) Algibacter psychrophilus sp. nov., a psychrophilic bacterium isolated from marine sediment. Int J Syst Evol Microbiol 65: 1735–1740.
10.1099/ijs.0.000168
CAS PubMed Web of Science® Google Scholar
Jung YT, Kim JH, Oh TK, & Yoon JH (2012) Mariniflexile aquimaris sp. nov., isolated from seawater, and emended description of the genus Mariniflexile Nedashkovskaya et al. 2006. Int J Syst Evol Microbiol 62: 539–544.
10.1099/ijs.0.031492-0
CAS PubMed Web of Science® Google Scholar
Jung YT, Lee JS, & Yoon JH (2016) Gaetbulibacter aquiaggeris sp. nov., a member of the Flavobacteriaceae isolated from seawater. Int J Syst Evol Microbiol 66: 1131–1137.
10.1099/ijsem.0.000845
CAS PubMed Web of Science® Google Scholar
Jung YT & Yoon JH (2013) Mariniflexile jejuense sp. nov., isolated from the junction between seawater and a freshwater spring, and emended description of the genus Mariniflexile . Int J Syst Evol Microbiol 63: 1329–1334.
10.1099/ijs.0.042796-0
CAS PubMed Web of Science® Google Scholar
Kang H, Cha I, Kim HJ, & Oh K (2017) Sabulilitoribacter arenilitoris sp. nov., isolated from seashore sand. Int J Syst Evol Microbiol 67: 4796–4800.
10.1099/ijsem.0.002378
CAS PubMed Web of Science® Google Scholar
Kim DH & Kim DY (2013) Microbial diversity in the intestine of olive flounder (Paralichthys olivaceus). Aquaculture 414–415: 103–108.
10.1016/j.aquaculture.2013.06.008
Web of Science® Google Scholar
Lee DH, Cho SJ, Kim SM, & Lee SB (2012) Postechiella marina gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol 62: 1528–1535.
10.1099/ijs.0.031302-0
CAS PubMed Web of Science® Google Scholar
Lee JH, Baik KS, & Seong CN (2015) Flaviramulus aquimarinus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 65: 644–649.
10.1099/ijs.0.066126-0
CAS PubMed Web of Science® Google Scholar
Lee SD (2007) Tamlana crocina gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea. Int J Syst Evol Microbiol 57: 764–769.
10.1099/ijs.0.64720-0
CAS PubMed Web of Science® Google Scholar
Lee YM, Jung YJ, Hong SG, Kim JH, & Kum H (2014) Diversity and physiological characteristics of culturable bacteria from marine sediments of Ross Sea, Antarctica. Kor J Microbiol 50: 119–127.
10.7845/kjm.2014.4014
Google Scholar
Li YF, Chen YR, Yang JL et al. (2014) Effects of substratum type on bacterial community structure in biofilms in relation to settlement of plantigrades of the mussel Mytilus coruscus . Int Biodeterior Biodegrad 96: 41–49.
10.1016/j.ibiod.2014.08.012
Web of Science® Google Scholar
Liu X, Lai Q, Du Y, Li G, Sun F, & Shao Z (2015) Tamlana nanhaiensis sp. nov., isolated from surface seawater collected from the South China Sea. Antonie van Leeuwenhoek 107: 1189–1196.
10.1007/s10482-015-0410-x
CAS PubMed Web of Science® Google Scholar
Martin M, Barbeyron T, Martin R, Portetelle D, Michel G, & Vandenbol M (2015) The cultivable surface microbiota of the brown alga Ascophyllum nodosum is enriched in macroalgal-polysaccharide-degrading bacteria. Front Microbiol 6: 1487.
10.3389/fmicb.2015.01487
Web of Science® Google Scholar
Meres NJ, Ajuzie CC, Sikaroodi M, Vemulapalli M, Shields JD, & Giliievet PM (2012) Dysbiosis in epizootic shell disease of the American lobster (Homarus americanus). J Shellfish Res 31: 463–472.
10.2983/035.031.0206
Web of Science® Google Scholar
Nedashkovskaya OI, Kim SB, Han SK, Rhee MS, Lysenko AM, Rohde M et al. (2004) Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54: 1257–1261.
10.1099/ijs.0.02949-0
CAS PubMed Web of Science® Google Scholar
Nedashkovskaya OI, Kim SB, Kwak J, Mikhailov VV, & Bae KS (2006) Mariniflexile gromovii gen. nov., sp. nov., a gliding bacterium isolated from the sea urchin Strongylocentrotus intermedius . Int J Syst Evol Microbiol 56: 1635–1638.
10.1099/ijs.0.64293-0
CAS PubMed Web of Science® Google Scholar
Nedashkovskaya OI, Vancanneyt M, Kim SB, Hoste B, & Bae KS (2007) Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter . Int J Syst Evol Microbiol 57: 2147–2150.
10.1099/ijs.0.65165-0
CAS PubMed Web of Science® Google Scholar
Oberbeckmann S, Loeder MGJ, Gerdts G, & Osborn AM (2014) Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters. FEMS Microbiol Ecol 90: 478–492.
10.1111/1574-6941.12409
CAS PubMed Web of Science® Google Scholar
Oren A & Garrity GM (2016) Validation List no. 172. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 66: 4299–4305.
10.1099/ijsem.0.001585
PubMed Web of Science® Google Scholar
Park S, Ha MJ, Yoon SY, & Yoon JH (2017) Flaviramulus aestuariivivens sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 67: 2337–2342.
10.1099/ijsem.0.001953
CAS PubMed Web of Science® Google Scholar
Park S, Jung YT, Lee JS, Lee KC, & Yoon JH (2013a) Sabulilitoribacter multivorans gen. nov., sp. nov., a polysaccharide-degrading bacterium of the family Flavobacteriaceae isolated from seashore sand. Antonie van Leeuwenhoek 104: 973–981.
10.1007/s10482-013-0016-0
CAS PubMed Web of Science® Google Scholar
Park S, Jung YT, & Yoon JH (2013b) Algibacter miyuki sp. nov., a member of the family Flavobacteriaceae isolated from leachate of a brown algae reservoir. Antonie van Leeuwenhoek 104: 253–260.
10.1007/s10482-013-9944-y
CAS PubMed Web of Science® Google Scholar
Park S, Jung YT, & Yoon JH (2013c) In Validation List No. 155. Int J Syst Evol Microbiol 64: 1–5.
Google Scholar
Park S, Jung YT, & Yoon JH (2013d) Mariniflexile soesokkakense sp. nov., a member of the family Flavobacteriaceae isolated from the junction between the North Pacific Ocean and a freshwater spring, and emended description of the genus Mariniflexile . Antonie van Leeuwenhoek 104: 769–777.
10.1007/s10482-013-9985-2
CAS PubMed Web of Science® Google Scholar
Park S, Lee JS, Lee KC, & Yoon JH (2013e) Algibacter undariae sp. nov., isolated from a brown algae reservoir. Int J Syst Evol Microbiol 63: 3704–3709.
10.1099/ijs.0.049734-0
CAS PubMed Web of Science® Google Scholar
Park SC, Choe HN, Baik KS, Lee KH, & Seong CN (2012) Gaetbulibacter aestuarii sp. nov., isolated from shallow coastal seawater, and emended description of the genus Gaetbulibacter . Int J Syst Evol Microbiol 62: 150–154.
10.1099/ijs.0.028944-0
CAS PubMed Web of Science® Google Scholar
Park SC, Choe HN, Hwang YM, Baik KS, Kim SN, Lee YS et al. (2013f) Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans . Int J Syst Evol Microbiol 63: 1524–1531.
10.1099/ijs.0.042341-0
CAS PubMed Web of Science® Google Scholar
Park SC, Hwang YM, Lee JH, Baik KS, & Seong CN (2013g) Algibacter agarivorans sp. nov., and Algibacter agarilyticus sp. nov., isolated from seawater, reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter . Int J Syst Evol Microbiol 63: 3494–3500.
10.1099/ijs.0.051300-0
CAS PubMed Web of Science® Google Scholar
Park SC, Hwang YM, Choe HN, Baik KS, Kim H, & Seong CN (2013h) Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov. Int J Syst Evol Microbiol 63: 2038–2042.
10.1099/ijs.0.045815-0
CAS PubMed Web of Science® Google Scholar
Park S, Kang CH, Park JM, & Yoon JH (2014) Mariniflexile ostreae sp. nov., a member of the family Flavobacteriaceae isolated from an oyster. Antonie van Leeuwenhoek 106: 555–563.
10.1007/s10482-014-0227-z
CAS PubMed Web of Science® Google Scholar
Romanenko LA, Tanaka N, Kurilenko VV, & Svetashev VI (2014) Tamlana sedimentorum sp. nov., isolated from shallow sand sediments of the Sea of Japan. Int J Syst Evol Microbiol 64: 2891–2896.
10.1099/ijs.0.061812-0
CAS PubMed Web of Science® Google Scholar
Salaün S, Kervarec N, Potin P, Haras D, Piotto M, & La Barre S (2010) Whole-cell spectroscopy is a convenient tool to assist molecular identification of cultivatable marine bacteria and to investigate their adaptive metabolism. Talanta 80: 1758–1770.
10.1016/j.talanta.2009.10.020
CAS PubMed Web of Science® Google Scholar
Schulze AD, Alabi AO, Tattersall-Sheldrake AR, & Miller KM (2006) Bacterial diversity in a marine hatchery: balance between pathogenic and potentially probiotic bacterial strains. Aquaculture 256: 50–73.
10.1016/j.aquaculture.2006.02.008
Web of Science® Google Scholar
Sun C, Fu GY, Zhang CY, Hu J, Xu L, Wang RJ et al. (2016a) Isolation and complete genome sequence of Algibacter alginolytica sp. nov., a novel seaweed-degrading Bacteroidetes bacterium with diverse putative polysaccharide utilization loci. Appl Environ Microbiol 82: 2975–2987.
10.1128/AEM.00204-16
CAS PubMed Web of Science® Google Scholar
Sun C, Fu GY, Zhang CY, Hu J, Xu L, Wang RJ et al. (2016b) In Validation List No. 172. Int J Syst Evol Microbiol 66: 4299–4305.
PubMed Web of Science® Google Scholar
Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K et al. (2014) Draft genome sequences of marine flavobacterium Algibacter lectus strains SS8 and NR4. Genome Announc 2: e01168-14.
10.1128/genomeA.01168-14
PubMed Google Scholar
Wong SK, Park S, Lee JS, Lee KC, Ogura Y, Hayashi T et al. (2017) Algibacter aquaticus sp. nov., a slightly alkaliphilic marine Flavobacterium isolated from coastal surface water. Int J Syst Evol Microbiol 67: 2199–2204.
10.1099/ijsem.0.001924
CAS PubMed Web of Science® Google Scholar
Yang SJ & Cho JC (2008) Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter . Int J Syst Evol Microbiol 58: 315–318.
10.1099/ijs.0.65382-0
CAS PubMed Web of Science® Google Scholar
Yi H, Cho JC, & Chun J (2011) Pontirhabdus pectinivorans gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61: 2475–2481.
10.1099/ijs.0.027441-0
CAS PubMed Web of Science® Google Scholar
Yoon JH, Kang SJ, Lee MH, & Oh TK (2008) Tamlana agarivorans sp. nov., isolated from seawater off Jeju Island in Korea. Int J Syst Evol Microbiol 58: 1892–1895.
10.1099/ijs.0.65704-0
CAS PubMed Web of Science® Google Scholar
Yoon JH, Lee SY, & Oh TK (2013) Gaetbulibacter lutimaris sp. nov., isolated from a tidal flat sediment. Int J Syst Evol Microbiol 63: 995–1000.
10.1099/ijs.0.040352-0
CAS PubMed Web of Science® Google Scholar
Yoon JH & Park S (2013) Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir. Int J Syst Evol Microbiol 63: 4771–4776.
10.1099/ijs.0.053983-0
CAS PubMed Web of Science® Google Scholar
Zhang DC, Wu J, Neuner K, Yao J, & Margesin R (2015) Algibacter amylolyticus sp. nov., isolated from intertidal sediment. Int J Syst Evol Microbiol 65: 1556–1560.
10.1099/ijs.0.000134
CAS PubMed Web of Science® Google Scholar
Zhang XY, Liu A, Liu C, Li H, Li GW, Xu Z et al. (2013a) Arenitalea lutea gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from intertidal sand of Yellow Sea, China. Int J Syst Evol Microbiol 63: 2853–2858.
10.1099/ijs.0.049304-0
CAS PubMed Web of Science® Google Scholar
Zhang Y, Tang K, Shi X, & Zhang XH (2013b) Flaviramulus ichthyoenteri sp. nov., an N-acylhomoserine lactone-degrading bacterium isolated from the intestine of a flounder (Paralichthys olivaceus), and emended descriptions of the genus Flaviramulus and Flaviramulus basaltis . Int J Syst Evol Microbiol 63: 4477–4483.
10.1099/ijs.0.053744-0
CAS PubMed Web of Science® Google Scholar

Bergey's Manual of Systematics of Archaea and Bacteria

Browse other articles of this reference work:

Algibacter ^†,^‡

View previous versions

Algibacter ^†,^‡

Abstract

References

References

Information

About Wiley Online Library

Help & Support

Opportunities

Connect with Wiley

Algibacter †,‡

View previous versions

Algibacter †,‡

Abstract

References

References

Related

Information

Algibacter ^†,^‡

Algibacter ^†,^‡