Detection of recurrent chromosomal gains and losses in primary nasopharyngeal carcinoma by comparative genomic hybridisation
Corresponding Author
Angela Bik-Yu Hui
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China. Fax: +852–2637 6274.Search for more papers by this authorKwok-Wai Lo
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorSing-Fai Leung
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorPeter Teo
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorMichael K.F. Fung
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorK.F. To
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorNathalie Wong
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorPeter H.K. Choi
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorJoseph C.K. Lee
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorDolly P. Huang
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorCorresponding Author
Angela Bik-Yu Hui
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China. Fax: +852–2637 6274.Search for more papers by this authorKwok-Wai Lo
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorSing-Fai Leung
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorPeter Teo
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorMichael K.F. Fung
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorK.F. To
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorNathalie Wong
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorPeter H.K. Choi
Clinical Oncology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorJoseph C.K. Lee
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorDolly P. Huang
Department of Anatomical and Cellular Pathology, Prince of Wales Hospital, the Chinese University of Hong Kong, Shatin, Hong Kong, People's Republic of China
Search for more papers by this authorAbstract
Nasopharyngeal carcinoma (NPC) is a common cancer in Southern China but rare in Western countries. To search for genetic alterations in NPC, we examined a series of 20 primary tumours with comparative genomic hybridisation. The identified common chromosomal alterations included gain of chromosomes 1q, 8, 12, 19 and 20 as well as loss of chromosomes 1p, 3p, 9p, 9q, 11q, 13q, 14q and 16q. In concordance with our previous loss of heterozygosity studies in primary NPC, a high incidence of loss was detected on chromosomes 3p (75%), 11q (70%) and 14q (65%). Losses of 9q (60%), 13q (50%) and 16q (40%) were also identified. Novel chromosomal gains were observed on chromosome 12, with a high frequency (70%). Current analysis has revealed a comprehensive profile of the chromosomal regions showing losses and gains in primary NPC. Our findings may provide an entry point for conducting further investigations to locate the putative tumour-suppresser genes and oncogenes that may be involved in the tumourigenesis of NPC. Int. J. Cancer 82:498–503, 1999. © 1999 Wiley-Liss, Inc.
REFERENCES
- Bernheim, A., Rousselet, G., Massaad, L., Busson, P., and Tursz, T., Cytogenetic studies in three xenografted nasopharyngeal carcinoma. Cancer Genet. Cytogenet., 66, 11–15 (1993). Medline
-
Bruch, J.,
Wohr, G.,
Hautmann, R.,
Mattfeldt, T.,
Bruderlein, S.,
Möller, P.,
Sauter, S.,
Hameister, H.,
Bogel, W., and
Paiss, T.,
Chromosomal changes during progression of transitional cell carcinoma of the bladder and delineation of the amplified interval on chromosome arm 8q.
Genes Chromosomes Cancer,
23, 167–174
(1998).
Medline
10.1002/(SICI)1098-2264(199810)23:2<167::AID-GCC10>3.0.CO;2-L CAS PubMed Web of Science® Google Scholar
- Cheng, R.Y.S., Lo, K.W., Huang, D.P., and Tsao, S.W., Loss of heterozygosity on chromosome 14 in primary nasopharyngeal carcinoma. Int. J. Oncol., 10, 1047–1050 (1997).
- Cheng, Y., Poulos, N.E., Lung, M.L., Hampton, G., Ou, B., Lerman, M.I., and Stanbridge, E.J., Functional evidence for a nasopharyngeal carcinoma tumour suppressor gene that maps at chromosome 3p21.3. Proc. nat. Acad. Sci. (Wash.), 17, 3042–3047 (1998).
-
Choi, P.H.K.,
Suen, M.W.M.,
Huang, D.P.,
Lo, K.W., and
Lee, J.C.K.,
Nasopharyngeal carcinoma: genetic changes, Epstein-Barr virus infection, or both, a clinical and molecular study of 36 patients.
Cancer,
72, 2873–3878
(1993).
Medline
10.1002/1097-0142(19931115)72:10<2873::AID-CNCR2820721003>3.0.CO;2-A CAS PubMed Web of Science® Google Scholar
- Evan, G.I., Wyllie, A.H., Gilbert, C.S., Littlewood, T.D., Land, H., Brooks, M., Waters, C.M., Penn, L.Z., and Hancock, D.C., Induction of apoptosis in fibroblasts by c-myc protein. Cell, 69, 119–128 (1992). Medline
-
Fejzo, M.S.,
Godfrey, T.,
Chen, C.,
Waldman, F., and
Gray, J.W.,
Molecular cytogenetic anlysis of consistent abnormalities at 8q12-q22 in breast cancer.
Genes Chromosomes Cancer,
22, 105–113
(1998).
Medline
10.1002/(SICI)1098-2264(199806)22:2<105::AID-GCC4>3.0.CO;2-0 CAS PubMed Web of Science® Google Scholar
- Friend, S.H., Bernards, R., Rogelj, S., Weinberg, R.A., Rapaport, J.M., Albert, D.M., and Dryja, T.P., A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma. Nature (Lond.), 323, 643–646 (1986). Medline
- Hildesheim, A., and Levine, P.H., Etiology of nasopharyngeal carcinoma: a review. Epidemiol. Rev., 15, 466–485 (1993). Medline
- Hirohashi, S., Inactivation of the E-cadherin-mediated cell adhesion system in human cancers. Amer. J. Pathol. 153, 333–339 (1998). Medline
- Ho, J.H.C., Genetic and environmental factors in nasopharyngeal carcinoma. In: W. Nakahara (ed.), Recent advances in human tumor virology and immunology, pp. 275–295, University Park Press, Baltimore (1971).
- Huang, D., Ho, J., Chan, W., Lau, W., and Lui, M., Cytogenetics of undifferentiated nasopharyngeal carcinoma xenografts from southern Chinese. Int. J. Cancer, 43, 936–939 (1989). Medline
- Huang, D.P., Lo, K.W., Choi, P., Leung, S.F., Ng, A., Tsao, S., Yiu, G., and Lee, J.C.K., Loss of heterozygosity deletion on the short arm of chromosome 3 in nasopharyngeal carcinoma. Cancer Genet. Cytogenet., 54, 91–99 (1991). Medline
- Huang, D.P., Lo, K.W., van Hasselt, A., Woo, J.K.S., Choi, P.H.K., Leung, S.F., Cheung, S.T., Cairns, P., Sidransky, D., and Lee, J.C.K., A region of homozygous deletion on chromosome 9p21–22 in primary nasopharyngeal carcinoma. Cancer Res., 54, 4003–4006 (1994). Medline
- Hui, A.B.Y., Cheung, S.T., Fong, Y., Lo, K.W., and Huang, D.P., Characterization of a new EBV-associated nasopharyngeal carcinoma cell line. Cancer Genet. Cytogenet., 101, 83–88 (1998). Medline
- Hui, A.B.Y., Lo, K.W., Leung, S.F., Choi, P.H.K., Fong, Y., Lee, J.C.K., and Huang, D.P., Loss of heterozygosity on the long arm of chromosome 11 in nasopharyngeal carcinoma. Cancer Res., 56, 3225–3228 (1996). Medline
-
Ilyas, M., and
Tomlinson, I.P.,
The interactions of APC, E-cadherin, and β-cadherin in tumour development and progression.
J. Pathol.,
182, 128–137
(1997).
Medline
10.1002/(SICI)1096-9896(199706)182:2<128::AID-PATH839>3.0.CO;2-Q CAS PubMed Web of Science® Google Scholar
- Kallioniemi, A., Kallioniemi, O.P., Sudar, D., Rutovitz, D., Gray, J.W., Waldman, F., and Pinkel, D., Comparative genomic hybridisation for molecular cytogenetic analysis of solid tumors. Science, 258, 818–821 (1992). Medline
- Kallioniemi, L.P., Kallioniemi, A., Piper, J., Isola, J., Waldman, F.M., Gray, J.W., and Pinkel, D., Optimizing comparative genomic hybridisation for analysis of DNA sequence copy number changes in solid tumors. Genes Chromosomes Cancer, 10, 231–243 (1994). Medline
- Khatib, Z.A., Matshsheim, H., Valentine, M., Shapiro, D.N., Sherr, C.J., and Lool, A.T., Coamplification of the CDK4 gene with MDM2 and GLI in human sarcomas. Cancer Res., 53, 5535–5541 (1993). Medline
- Kristensen, M., Quek, H.H., Chew, C.T., and Chan, S.H., A cytogenetic study of 74 nasopharyngeal carcinoma biopsies. Ann. Acad. Med., 20, 560–597 (1991).
- Lo, K.W., Cheung, S.T., Leung, S.F., van Hasselt, A., Tsang, Y.S., Mak, K.F., Chung, Y.F., Woo, J.K.S., Lee, J.C.K., and Huang, D.P., Hypermethylation of the p16 gene in nasopharyngeal carcinoma. Cancer Res., 56, 2721–2725 (1996). Medline
- Lo, K.W., Huang, D.P., and Lau, K.M., p16 gene alterations in nasopharyngeal carcinoma. Cancer Res., 55, 2039–2043 (1995). Medline
- Lo, K.W., Huang, D.P.W.S., and Lee, J.C.K., Genetic changes in nasopharyngeal carcinoma. Chin. Med. J., 110, 548–559 (1997). Medline
- Lo, K.W., Tsao, S.W., Leung, S.F., Choi, P.H.K., Lee, J.C.K., and Huang, D.P., Detailed deletion mapping on the short arm of chromosome 3 in nasopharyngeal carcinoma. Int. J. Oncol., 4, 1359–1364 (1994).
-
Mahlamaki, E.H.,
Hoglund, M.,
Gorunova, L.,
Karhu, R.,
Dawiskiba, S.,
Andren-Sandberg, A.,
Kallioniemi, O.P., and
Johansson, B.,
Compartive genomic hybridisation reveals frequent gains of 20q, 8q, 11q, 12p and 17q, and losses of 18q, 9p, and 15q in pancreatic cancer.
Genes Chromosomes Cancer,
20, 383–391
(1997).
Medline
10.1002/(SICI)1098-2264(199712)20:4<383::AID-GCC10>3.0.CO;2-O CAS PubMed Web of Science® Google Scholar
- Maniatis, T., Fritsch, E., Sambrook, J., Molecular cloning: a laboratory manual. ( 2nd ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989).
- McGarvey, T.W., Maruta, Y., Tomaszewski, J.E., Linnenbach, A.J., and Malkowicz, S.B., PTCH gene mutations in invasive transitional cell carcinoma of the bladder. Oncogene, 17, 1167–1172 (1998). Medline
- Mostert, M., Verkert, A.J.M.H., van de Pol, M., Heighway, J., Marynen, P., Rosenberg, C., van Kessel, A.G., van Echten, J., de Jong, B., Oosterhuis, J.W., and Looijenga, L.H.J., Identification of the critical region of 12p over-representation in testicular germ cell tumors of adolescents and adults. Oncogene, 16, 2617–2627 (1998). Medline
-
Mutirangura, A.,
Pornthanakasem, W.,
Sriuranpong, V.,
Supiyaphur, P., and
Vorarud, N.,
Loss of heterozygosity on chromosome 14 in nasopharyngeal carcinoma.
Int. J. Cancer,
78, 153–156
(1998).
Medline
10.1002/(SICI)1097-0215(19981005)78:2<153::AID-IJC5>3.0.CO;2-Y CAS PubMed Web of Science® Google Scholar
- Mutirangura, A., Tanunyutthawongese, C., Pornthanakasem, W., Kerekhanjanarong, V., Sriuranpong, V., Yenrudi, S., Supiyaphur, P., and Vorarud, N., Genomic alterations in nasopharyngeal carcinoma: loss of heterozygosity and Epstein-Barr virus infection. Brit. J. Cancer, 76, 770–776 (1997). Medline
- Nawroz, D.H.M., Loch, W.M., Westra, W.H., Yoo, G., and Sidransky, D., Lack of BRCA2 alteration in primary head and neck squamous cell carcinoma. Otolaryngol. Head Neck Surg., 119, 21–25 (1997).
- Negrini, M., Rasio, D., Hampton, G.M., Sabbioni, S., Rattan, S., Carter, S.L., Rosenberg, A.L., Schwartz, G.F., Shiloh, Y., Cavenee, W.K., and Croce, C.M., Definition and refinement of chromosome 11 regions of loss of heterozygosity in breast cancer: identification of a new region at 11q23.3. Cancer Res., 55, 3003–3007 (1995). Medline
- Oliner, J.D., Kinzler, K.W., Meltzer, P.S., George, D.L., and Vogelstein, B., Amplification of a gene encoding a p53-associated protein in human sarcomas. Nature (Lond.), 358, 80–83 (1992). Medline
- Petersen, I., and 13 others, Patterns of chromosomal imbalances in adenocarcinoma and squamous cell carcinoma of the lung. Cancer Res., 12, 2331–2335 (1997).
- Porter, M.J., Field, J.K., Leung, S.F., Lo, D., Lee, J.C.K., Spandidos, D.A., and VAN Hassalt, C.A., The detection of the c-myc and ras oncogenes in nasopharyngeal carcinoma by immunohistochemistry. Acta.Otolaryngol., 114, 105–109 (1994). Medline
- Qian, W., Hu, L.F., Wang, Y., Magnusson, K.P., Kashuba, E., Klein, G., and Wiman, K.G., Infrequent MDM2 gene amplification and absence of gross WAF1 gene alterations in nasopharyngeal carcinoma. Europ. J. Cancer Oral Oncol., 31B, 328–332 (1995). Medline
- Raab-Traub, N., Epstein-Barr virus and nasopharyngeal carcinoma. Semin. Cancer Biol., 13, 297–307 (1992).
- Raeymaekers, P., van Zand, K., Jun, L., Hoeglund, M., Cassiman, J.J., van den Berghe, H., and Marynen, P., A radiation hybrid map with 60 loci covering the entire short arm of chromosome 12. Genomics, 29, 170–178 (1995). Medline
- Rosin, M.P., Cairns, P., Epstein, J.I., Schoenberg, M.P., and Sidransky, D., Partial allelotype of carcinoma in situ of the human bladder. Cancer Res., 22, 5213–5216 (1995).
-
Scheab, M.,
Amplification of oncogenes in human cancer cells.
BioEssays,
20, 473–470
(1998).
Medline
10.1002/(SICI)1521-1878(199806)20:6<473::AID-BIES5>3.0.CO;2-N CAS PubMed Web of Science® Google Scholar
- Shanmugaratnam, K., Histological typing of upper respiratory tract tumours. In: International histological typing of tumours, vol. 19, p. 19–20, WHO, Geneva (1978).
- Sun, Y., Hegamyer, G., and Colburn, N.H., Nasopharyngeal carcinoma shows no detectable retinoblastoma susceptibility gene alterations. Oncogene, 8, 791–795 (1993). Medline
-
Szymanska, J.,
Tarkkanem, M.,
Wiklund, T.,
Virolainen, M.,
Blomqvist, C.,
Asko-Seljavaara, S.,
Tukiainen, E.,
Elomaa, I., and
Knuutila, S.,
Gains and losses of DNA sequences in liposarcomas evaluated by comparative genomic hybridisation.
Genes Chromosomes Cancer,
15, 89–94
(1996).
Medline
10.1002/(SICI)1098-2264(199602)15:2<89::AID-GCC2>3.0.CO;2-# CAS PubMed Web of Science® Google Scholar
- Tien, H.F., Lee, F.Y., Chuang, S.M., and Lin, C.T., Cytogenetic characterization of a nasopharyngeal carcinoma cell line and its subline. Cancer Genet. Cytogenet., 49, 31–36 (1990). Medline
- Weber, R.G., Bostrom, J., Wolter, M., Baudis, M., Collins, V.P., Reifenberger, G., and Lichter, P., Analysis of genomic alteration in benign, atypical, and ansplastic meningiomas: toward a genetic model of meningioma progression. Proc. nat. Acad. Sci.(Wash.), 26, 14719–14724 (1997).
- Wooster, R., Neuhausen, S.L., Mangeion, J., Quirk, Y., Ford, D., Collins, N., Nguyen, K., Seal, S., Tran, T., and Averill, D., Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12–13. Science, 265, 2088–2090 (1994). Medline
- Zhang, S., Gao, X., and Zeng, Y., Cytogenetic studies on an epithelial cell line derived from poorly differentiated nasopharyngeal carcinoma. Int. J. Cancer, 31, 587–590 (1983). Medline
- Zhang, S., Wu, Y., Zeng, Y., Zech, L., and Klein, G., Cytogenetic studies on an epithelioid cell line derived from nasopharyngeal carcinoma. Hereditas (Lund.), 97, 23–28 (1982).