Strong linkage disequilibrium and haplotype analysis in Japanese pedigrees with Machado-Joseph disease
Kotaro Endo
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorHidenao Sasaki
Department of Neurology, National Sanatorium West-Niigata Central Hospital, Niigata, Japan
Search for more papers by this authorAkemi Wakisaka
Department of Neurology and Department of Pathology, Hokkaido University School of Medicine, Sapporo, Hokkaido, Japan
Search for more papers by this authorHajime Tanaka
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorMasaaki Saito
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorShuichi Igarashi
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorYoshihisa Takiyama
Department of Neurology, Jichi Medical School, Minamikawachi, Tochigi, Japan
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorKazuhiro Sanpei
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorKiyoshi Iwabuchi
Department of Neurology and Psychiatry, Kanagawa Rehabilitation Center, Atsugi, Kanagawa, Japan
Search for more papers by this authorYoshihiro Suzuki
Department of Internal Medicine III, Yamagata University School of Medicine, Yamagata, Japan
Search for more papers by this authorKeiko Onari
Department of Neurology, University of Occupational and Environmental Health, Kitakyushu, Fukuoka, Japan
Search for more papers by this authorTomokazu Suzuki
Department of Clinical Genetics, Kyushu University, Beppu, Fukuoka, Japan
Search for more papers by this authorJean Weissenbach
Genethon, Evry, Unité de Génétique Moléculaire Humain, CNRS URA 1445, Institut Pasteur, Paris, France
Search for more papers by this authorJames L. Weber
Marshfield Medical Research Foundation, Marshfield, Wisconsin
Search for more papers by this authorYoshiko Nomura
Segawa Neurological Clinic for Children, Chiyoda-ku, Tokyo, Japan
Search for more papers by this authorMasaya Segawa
Segawa Neurological Clinic for Children, Chiyoda-ku, Tokyo, Japan
Search for more papers by this authorMasatoyo Nishizawa
Department of Neurology, Jichi Medical School, Minamikawachi, Tochigi, Japan
Search for more papers by this authorCorresponding Author
Shoji Tsuji
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, 1 Asahimachi, Niigata 951, JapanSearch for more papers by this authorKotaro Endo
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorHidenao Sasaki
Department of Neurology, National Sanatorium West-Niigata Central Hospital, Niigata, Japan
Search for more papers by this authorAkemi Wakisaka
Department of Neurology and Department of Pathology, Hokkaido University School of Medicine, Sapporo, Hokkaido, Japan
Search for more papers by this authorHajime Tanaka
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorMasaaki Saito
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorShuichi Igarashi
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorYoshihisa Takiyama
Department of Neurology, Jichi Medical School, Minamikawachi, Tochigi, Japan
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorKazuhiro Sanpei
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Search for more papers by this authorKiyoshi Iwabuchi
Department of Neurology and Psychiatry, Kanagawa Rehabilitation Center, Atsugi, Kanagawa, Japan
Search for more papers by this authorYoshihiro Suzuki
Department of Internal Medicine III, Yamagata University School of Medicine, Yamagata, Japan
Search for more papers by this authorKeiko Onari
Department of Neurology, University of Occupational and Environmental Health, Kitakyushu, Fukuoka, Japan
Search for more papers by this authorTomokazu Suzuki
Department of Clinical Genetics, Kyushu University, Beppu, Fukuoka, Japan
Search for more papers by this authorJean Weissenbach
Genethon, Evry, Unité de Génétique Moléculaire Humain, CNRS URA 1445, Institut Pasteur, Paris, France
Search for more papers by this authorJames L. Weber
Marshfield Medical Research Foundation, Marshfield, Wisconsin
Search for more papers by this authorYoshiko Nomura
Segawa Neurological Clinic for Children, Chiyoda-ku, Tokyo, Japan
Search for more papers by this authorMasaya Segawa
Segawa Neurological Clinic for Children, Chiyoda-ku, Tokyo, Japan
Search for more papers by this authorMasatoyo Nishizawa
Department of Neurology, Jichi Medical School, Minamikawachi, Tochigi, Japan
Search for more papers by this authorCorresponding Author
Shoji Tsuji
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan
Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, 1 Asahimachi, Niigata 951, JapanSearch for more papers by this authorAbstract
To identify the markers tightly linked to Machado-Joseph disease (MJD) and to investigate whether a limited number of ancestral chromosomes are shared by Japanese MJD pedigrees, a detailed linkage analysis employing D14S55, D14S48, D14S67, D14S291, D14S280, AFM343vf1, D14S81, D14S265, D14S62, and D14S65 was performed. The results of multipoint linkage analysis as well as detection of critical recombination events indicate that the gene for MJD is localized in a 4-cM region between D14S280-D14S81. We found strong linkage disequilibria at AFM343vf1 and D14S81, and association of a few common haplotypes with MJD. These results indicate that there is an obvious founder effect in Japanese MJD and suggest the possibility of the existence of predisposing haplotypes which are prone to expansions of CAG repeats. © 1996 Wiley-Liss, Inc.
References
- Bengtsson BO, Thomson G (1981): Measuring the strength of associations between HLA antigens and diseases. Tissue Antigens 18: 356–363.
- Bharucha NE, Bharucha EP, Bhabha SK (1986): Machado-Joseph-Azorean disease in India. Arch Neurol 43: 142–144.
- Coutinho P, Andrade C (1978): Autosomal dominant system degeneration in Portuguese families of the Azores Islands. A new genetic disorder involving cerebellar, pyramidal, extrapyramidal and spinal cord motor functions. Neurology 28: 703–709.
- Devlin B, Risch N (1995): A comparison of linkage disequilibrium measures for fine scale mapping. Genomics 29: 311–322.
- Fowler HL (1984): Machado-Joseph-Azorean disease. A ten-year study. Arch Neurol 41: 921–925.
- Healton EB, Brust JCM, Kerr DL, Resor S, Penn A (1980): Presumably Azorean disease in a presumably non-Portuguese family. Neurology 30: 1084–1089.
- Hirayama K, Takayanagi T, Nakamura R, Yanagisawa N, Hattori T, Kita K, Yanagimoto S, Fujita M, Nagaoka M, Satomura Y, Sobue I, Iizuka R, Toyokura Y, Satoyoshi E (1994): Spinocerebellar degenerations in Japan. A nationwide epidemiological and clinical study. Acta Neurol Scand [Suppl] 153: 1–22.
- Hungtington's Disease Collaborative Research Group (1993): A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. Cell 72: 971–983.
- Imbert G, Kretz C, Johnson K, Mandel JL (1993): Origin of the expansion mutation in myotonic dystrophy. Nat Genet 4: 72–76.
- Jain S, Maheshwari MC (1990): Eight families with Joseph's disease in India. Neurology 40: 128–131.
- Kawaguchi Y, Okamoto T, Taniwaki M, Aizawa M, Inoue M, Katayama S, Kawakami H, Nakamura S, Nishimura M, Akiguchi I, Kimura J, Narumiya S, Kakizuka A (1994): CAG expansions in a novel gene for Machado-Joseph disease at chromosome 14q32.1. Nat Genet 8: 221–228.
- Kitamura J, Kubuki Y, Tsuruta K, Kurihara T, Matsukura S (1989): A new family with Joseph disease in Japan. Homovanillic acid, magnetic resonance, and sleep apnea studies. Arch Neurol 46: 425–428.
- Knight SJL, Flannery AV, Hirst MC, Campbell L, Christodoulou Z, Phelps SR, Pointon J, Middleton-Price HR, Barnicoat A, Pembrey ME, Holland J, Oostra BA, Bobrow M, Davies KE (1993): Trinucleotide repeat amplification and hypermethylation of a CpG island in FRAXE mental retardation. Cell 74: 127–134.
- Knight SJL, Voelckel MA, Hirst MC, Flannery AV, Moncla A, Davies KE (1994): Triplet repeat expansion at the FRAXE locus and X-linked mild mental handicap. Am J Hum Genet 55: 81–86.
- Kremer EJ, Pritcherd M, Lynch M, Yu S, Holman K, Baker E, Warren ST, Schlessinger D, Sutherland GR, Richards RI (1991): Mapping of DNA instability at the fragile X to a trinucleotide repeat sequence p(CCG)n. Science 252: 1711–1714.
- Kunst CB, Warren ST (1994): Cryptic and polar variation of the fragile X repeat could result in predisposing normal alleles. Cell 77: 853–861.
- Lathrop GM, Lalouel JM (1984): Easy calculations of lod scores and genetic risks on small computers. Am J Hum Genet 36: 460–465.
- Lima L, Coutinho P (1980): Clinical criteria for diagnosis of Machado-Joseph disease: Report of a non-Azorean Portuguese family. Neurology 30: 319–322.
- Livingstone IR, Sequeiros J (1984): Machado-Joseph disease in an American-Italian family. J Neurogenet 1: 185–188.
- MacDonald ME, Novelletto A, Lin C, Tagle D, Barnes G, Bates G, Taylor S, Allitto B, Altherr M, Myers R, Lehrach H, Collins FS, Wasthmus JJ, Frontali M, Gusella JF (1992): The Huntington's disease candidate region exhibits many different haplotypes. Nat Genet 1: 99–103.
- Maniatis T, Fritsch EF, Sambrook J (1989): “ Molecular Cloning: A Laboratory Manual,” 2nd ed. New York: Cold Spring Harbor Press, pp 14–19.
- Nakano KK, Dawson DM, Spence A (1972): Machado disease. A hereditary ataxia in Portuguese emigrants to Massachusetts. Neurology 22: 49–55.
- Oberle I, Rousseau F, Heitz D, Kretz C, Devys D, Hanauer A, Boue J, Bertheas MF, Mandel JL (1991): Instability of a 550-base pair DNA segment and abnormal methylation in fragile X syndrome. Science 252: 1097–1102.
- Orr HT, Chung MY, Banfi S, Kwiatkowski TJJr, Servadio A, Beaudet AL, McCall AE, Duvick LA, Ranum LPW, Zoghbi HY (1993): Expansion of an unstable trinucleotide CAG repeat in spinocerebellar ataxia type 1. Nat Genet 4: 221–226.
- Oudet C, Mornet E, Serre JL, Thomas F, Lentes-Zengerling S, Kretz C, Deluchat C, Tejada I, Boue J, Boue A, Mandek JL (1993): Linkage disequilibrium between the fragile X mutation and two closely linked CA repeats suggests that fragile X chromosomes are derived from a small number of founder chromosomes. Am J Hum Genet 52: 297–304.
- Pou-Serradell A, Russi A, Ferrer I, Galofre E, Escudero D (1987): Maladie de Machado-Joseph dans une famille d'origine Espagnole. Rev Neurol (Paris) 143: 520–525.
- Richards RI, Holman K, Friend K, Kremer E, Hillen D, Staples A, Brown WT, Goonewardena P, Tarleton J, Schwartz C, Sutherland G (1992): Evidence of founder chromosomes in fragile X syndrome. Nat Genet 1: 257–260.
- Rosenberg RN, Nyhan WL, Bay C (1976): Autosomal dominant striatonigral degeneration: A clinical, pathological, and biochemical study of a new genetic disorder. Trans Am Neurol Assoc 101: 78–80.
- Rubinsztein DC, Leggo J, Amos W, Barton DE, Ferguson-Smith MA (1994): Myotonic dystrophy CTG repeats and the associated insertion/deletion polymorphism in human and primate populations. Hum Mol Genet 3: 2031–2035.
- Sakai T, Ohta M, Ishino H (1983): Joseph disease in a non-Portuguese family. Neurology 33: 74–80.
- Sasaki H, Wakisaka A, Takada A, Yoshiki T, Ihara T, Suzuki Y, Hamada T, Iwabuchi K, Onari K, Tada J, Suzuki T, Tashiro K (1995a): Mapping of the gene for Machado-Joseph disease within a 3.6-cM interval flanked by D14S291/D14S280 and D14S81, on the basis of studies of linkage and linkage disequilibrium in 24 Japanese families. Am J Hum Genet 56: 231–242.
- Sasaki H, Wakisaka A, Fukazawa T, Iwabuchi K, Hamada T, Takada A, Mukai E, Matsuura T, Yoshiki T, Tashiro K (1995b): CAG repeat expansion of Machado-Joseph disease in the Japanese: Analysis of the repeat instability for parental transmission, and correlation with disease phenotype. J Neurol Sci 133: 128–133.
- Sequeiros J, Coutinho P (1993): Epidemiology and clinical aspects of Machado-Joseph disease. Adv Neurol 61: 139–153.
- Sequeiros J, Silveira I, Maciel P, Coutinho P, Manaia A, Gaspar C, Burlet P, Loureiro L, Guimaraes J, Tanaka H, Takiyama Y, Sakamoto H, Nishizawa M, Nomura Y, Segawa M, Tsuji S, Melki J, Munnich A (1994): Genetic linkage studies of Machado-Joseph disease with chromosome 14q STRPs in 16 Portuguese-Azorean kindreds. Genomics 21: 645–648.
- Squitieri F, Andrew SE, Goldberg YP, Kremer B, Spence N, Zeisler J, Nichol K, Theilmann J, Greenberg J, Goto J, Kanazawa I, Vesa J, Peltonen L, Almqvist E, Anvret M, Telenius H, Lin B, Napolitano G, Morgan K, Hayden MR (1994): DNA haplotype analysis of Huntington disease reveals clues to the origins and mechanisms of CAG expansion and reasons for geographic variations of prevalence. Hum Mol Genet 3: 2103–2114.
- St. George-Hyslop P, Rogaeva E, Huterer J, Tsuda T, Santos J, Haines JL, Schlumpf K, Rogaev EI, Liang Y, Crapper McLachlan DR, Kennedy J, Weissenbach J, Billingsley GD, Cox DW, Lang AE, Wherrett JR (1994): Machado-Joseph disease in pedigrees of Azorean descent is linked to chromosome 14. Am J Hum Genet 55: 120–125.
- Suite ND, Sequeiros J, McKhann GM (1986): Machado-Joseph disease in a Sicilian-American family. J Neurogenet 3: 177–182.
- Takiyama Y, Ikemoto S, Tanaka Y, Mizuno Y, Yoshida M, Yasuda N (1989): A large Japanese family with Machado-Joseph disease: Clinical and genetic studies. Acta Neurol Scand 79: 214–222.
- Takiyama Y, Nishizawa M, Tanaka H, Kawashima S, Sakamoto H, Karube Y, Shimazaki H, Soutome M, Endo K, Ohta S, Kagawa Y, Kanazawa I, Mizuno Y, Yoshida M, Yuasa T, Horikawa Y, Oyanagi K, Nagai H, Kondo T, Inuzuka T, Onodera O, Tsuji S (1993): The gene for Machado-Joseph disease maps to human chromosome 14q. Nat Genet 4: 300–304.
- Takiyama Y, Igarashi S, Rogaeva EA, Endo K, Rogaev EI, Tanaka H, Sherrington R, Sanpei K, Liang Y, Saito M, Tsuda T, Takano H, Ikeda M, Lin C, Chi H, Kennedy J, Liang A, Wherrett J, Segawa M, Nomura Y, Yuasa T, Weissenbach J, Yoshida M, Nishizawa M, Kidd K, Tsuji S, St. George-Hyslop P (1995): Evidence for inter-generational instability in the CAG repeat in the MJD1 gene and for conserved haplotypes at flanking markers amongst Japanese and Caucasian subjects with Machado-Joseph Disease. Hum Mol Genet 4: 1137–1146.
- Twist EC, Casaubon LK, Ruttledge MH, Rao VS, Macleod PM, Radvany J, Zhao Z, Rosenberg RN, Farrer LA, Rouleau GA (1995): Machado Joseph disease maps to the same region of chromosome 14 as the spinocerebellar ataxia type 3 locus. J Med Genet 32: 25–31.
- Verkerk AJMH, Pieretti M, Sutcliffe JS, Fu YH, Kuhl DPA, Pizzuti A, Reinar O, Richards S, Victoria MF, Zhang F, Eussen BE, Ommen GJB, Blonden LAJ, Riggins GJ, Chastain JL, Kunst CB, Galjaard H, Caskey CT, Nelson DL, Oostra BA, Warren ST (1991): Identification of a gene (FMR-1) containing a CCG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell 65: 905–915.
- Wang G, Zhou B, Li Y, Guei D, Jiao J (1990): Studies on a large Huang's Chinese family with Joseph disease. J China Japan Friend Hosp [Suppl] 4: 269–279.
- Weber JL, May PE (1989): Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388–396.
- Woods BT, Schaumburg HH (1972): Nigro-spino-dentatal degeneration with nuclear ophthalmoplegia. A unique and partially treatable clinico-pathological entity. J Neurol Sci 17: 149–166.
- Yu S, Pritchard M, Kremer E, Lunch M, Nancarrow J, Backer E, Holman K, Mulley JC, Warren ST, Schlessinger D, Sutherland GR, Richard RI (1991): Fragile X genotype characterized by an unstable region of DNA. Science 252: 1179–1181.
- Yuasa T, Ohama E, Harayama H, Yamada M, Kawase Y, Wakabayashi M, Atsumi T, Miyatake T (1986): Joseph's disease: Clinical and pathological studies in a Japanese family. Ann Neurol 19: 152–157.